Expression of 1-1-3.2.5.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74808 | 0.148 |
27DAP/17DAP | 1.69671 | 0.804 |
39DAP/27DAP | 0.90508 | 0.631 |
41DAP/39DAP | 0.79684 | 0.512 |
42DAP/41DAP | 1.27122 | 0.983 |
43DAP/42DAP | 1.07526 | 1 |
47DAP/43DAP | 1.28942 | 0.746 |
52DAP/47DAP | 1.16432 | 0.787 |
57DAP/52DAP | 1.13914 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.45969 | 0.027 |
17DAP/reference | 0.69124 | 0.016 |
27DAP/reference | 0.683 | 0.012 |
39DAP/reference | 0.66574 | 0.017 |
41DAP/reference | 0.86654 | 0.267 |
42DAP/reference | 0.58816 | 0.003 |
43DAP/reference | 0.70502 | 0.025 |
47DAP/reference | 0.65061 | 0.004 |
52DAP/reference | 0.52133 | 0.012 |
57DAP/reference | 0.70272 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47173 | 0.036 |
27DAP/17DAP | 0.91765 | 0.446 |
39DAP/27DAP | 0.8542 | 0.35 |
41DAP/39DAP | 1.05344 | 0.895 |
42DAP/41DAP | 0.97824 | 0.715 |
43DAP/42DAP | 0.93481 | 0.415 |
47DAP/43DAP | 0.8388 | 0.41 |
52DAP/47DAP | 2.00167 | 0.048 |
57DAP/52DAP | 1.7983 | 0.094 |
57DAP/7DAP | 1.30033 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.6182 | 0.066 |
17DAP/reference | 0.59421 | 0.012 |
27DAP/reference | 0.77781 | 0.015 |
39DAP/reference | 0.55735 | 0.011 |
41DAP/reference | 0.50129 | 0.009 |
42DAP/reference | 0.57884 | 0.01 |
43DAP/reference | 0.42399 | 0.01 |
47DAP/reference | 0.38278 | 0.03 |
52DAP/reference | 0.47184 | 0.012 |
57DAP/reference | 0.37884 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.62596 | 0.053 |
17DAP/reference | 0.56111 | 0.028 |
27DAP/reference | 0.67075 | 0.087 |
39DAP/reference | 0.65901 | 0.102 |
41DAP/reference | 0.85909 | 0.124 |
42DAP/reference | 0.82474 | 0.15 |
43DAP/reference | 0.82059 | 0.043 |
47DAP/reference | 0.55576 | 0.016 |
52DAP/reference | 0.4884 | 0.008 |
57DAP/reference | 0.59832 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.66343 | 0.048 |
17DAP/reference | 0.58816 | 0.103 |
27DAP/reference | 0.46662 | 0.024 |
39DAP/reference | 0.45325 | 0.013 |
41DAP/reference | 0.59172 | 0.018 |
42DAP/reference | 0.56515 | 0.015 |
43DAP/reference | 0.52956 | 0.031 |
47DAP/reference | 0.28961 | 0.004 |
52DAP/reference | 0.72631 | 0.211 |
57DAP/reference | 0.43215 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.75296 | |
26DAP/20DAP | 3.50894 | 0.62 |
34DAP/26DAP | 2.98837 | 1 |
51DAP/34DAP | 1.46541 | 0.936 |
52DAP/51DAP | 2.7864 | 0.036 |
53DAP/52DAP | 0.7377 | 0.128 |
55DAP/53DAP | 1.22015 | 0.076 |
57DAP/55DAP | 0.28028 | 0.019 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.53415 | 0.429 |
68DAP/14DAP | 0.50516 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.38282 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.86237 | |
Mature Eggplant/Ripe Tomato | 0.52166 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.26554 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.95505 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.0262 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.87331 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09085 | 1 |
IL2-6/WTpooled | 1.08116 | 0.395 |
IL7-5/WTpooled | 3.02153 | |
IL7-3/WTpooled | 1.24463 | 1 |
IL12-4/WTpooled | 0.80542 | 0.581 |
IL1-4/WTpooled | 0.9835 | 1 |
WT/WTpooled | 0.83877 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79405 | 0.209 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95896 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.01255 | 1 |
DC3000/delta hrp 24h | 1.09504 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03994 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.11785 | 0.55 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00487 | 1 |
Var 0h | 0.57143 | 1 |
Var 12h I row2-row1 | 0.78676 | 0.467 |
Var 12h NI row2-row1 | 1.05221 | 1 |
Var 36h I row2-row1 | 0.9148 | 0.805 |
Var 36h NI row2-row1 | 1.57318 | 0.276 |
Var 60h I row2-row1 | 0.97402 | 0.952 |
Var 60h NI row2-row1 | 0.84888 | 0.977 |
Time course 0hI-0hNI | 0.87168 | 0.133 |
Time course 12hI-12hNI | 0.90984 | 0.454 |
Time course 36hI-36hNI | 0.8636 | 0.032 |
Time course 60hI-60hNI | 0.48952 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 4.79105 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.70163 | 1 |
transgenic ySAMdc/azygous control (red) | 1.56175 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96136 | 0.27 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.11408 | 1 |
Manapal/WT (red) | 1.0851 | 1 |
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