Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.2.5.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.75494	0.445
27DAP/17DAP	0.91239	0.882
39DAP/27DAP	1.65685	0.183
41DAP/39DAP	1.32294	0.921
42DAP/41DAP	1.23015	0.856
43DAP/42DAP	1.09876	0.94
47DAP/43DAP	1.1035	0.95
52DAP/47DAP	1.00986	0.87
57DAP/52DAP	0.8518	0.824

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13011	0.278
17DAP/reference	1.13053	0.843
27DAP/reference	1.15886	1
39DAP/reference	1.23953	0.136
41DAP/reference	1.4501	0.012
42DAP/reference	1.77539	0.003
43DAP/reference	1.30847	0.018
47DAP/reference	1.601	0.018
52DAP/reference	1.16681	0.134
57DAP/reference	1.02285	1

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.97451	0.663
27DAP/17DAP	0.91307	0.878
39DAP/27DAP	0.53066
41DAP/39DAP	3.35813
42DAP/41DAP	1.26693	0.861
43DAP/42DAP	0.37227
47DAP/43DAP	0.91676	0.373
52DAP/47DAP	1.05986	0.862
57DAP/52DAP	1.04429	0.871
57DAP/7DAP	1.26782	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.68876	0.039
17DAP/reference	0.70118	0.011
27DAP/reference	0.76877	0.01
39DAP/reference	0.74567	0.012
41DAP/reference	0.75736	0.011
42DAP/reference	0.73721	0.01
43DAP/reference	0.64717	0.011
47DAP/reference	0.56314	0.04
52DAP/reference	0.72141	0.011
57DAP/reference	0.71657	0.007

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.42583	0.033
17DAP/reference	2.03907	0.203
27DAP/reference	0.82022	0.212
39DAP/reference	1.01536	1
41DAP/reference	1.27578	0.021
42DAP/reference	0.6408	0.011
43DAP/reference	0.98647	0.736
47DAP/reference	1.22586
52DAP/reference	1.14757	0.322
57DAP/reference	1.15918	0.64

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.76339	0.022
17DAP/reference	0.83975	0.308
27DAP/reference	0.72812	0.021
39DAP/reference	0.65015	0.006
41DAP/reference	0.75775	0.019
42DAP/reference	0.76551	0.041
43DAP/reference	0.85052	0.027
47DAP/reference	0.79371
52DAP/reference	0.71878	0.125
57DAP/reference	0.7321	0.037

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.55359
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.61025
51DAP/34DAP	0.76727
52DAP/51DAP	1.59641	0.246
53DAP/52DAP	1.7274	0.034
55DAP/53DAP	1.12565	0.855
57DAP/55DAP	N/A	N/A
62DAP/57DAP	N/A	N/A
68DAP/62DAP	0.91526
68DAP/14DAP	1.3704

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.93148

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	0.88149	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.98042	1
IL12-4/WTpooled	0.90467	0.581
IL1-4/WTpooled	0.85796	0.415
WT/WTpooled	0.9852	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.02703	1
Var 12h I row2-row1	0.83684
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	2.27199	0.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.8594	1
Manapal/WT (red)	N/A	N/A