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Expression of 1-1-3.2.6.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.827770.166
27DAP/17DAP1.172530.885
39DAP/27DAP0.827030.549
41DAP/39DAP0.865980.475
42DAP/41DAP1.177280.841
43DAP/42DAP1.038951
47DAP/43DAP0.883350.603
52DAP/47DAP0.988230.92
57DAP/52DAP1.104480.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.992540.693
17DAP/reference0.956290.321
27DAP/reference0.963090.304
39DAP/reference0.969110.455
41DAP/reference0.981720.667
42DAP/reference1.042240.398
43DAP/reference1.08250.064
47DAP/reference0.905580.015
52DAP/reference0.904840.177
57DAP/reference0.774950.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.909310.277
27DAP/17DAP1.100150.598
39DAP/27DAP0.922510.394
41DAP/39DAP0.97550.968
42DAP/41DAP1.011650.991
43DAP/42DAP1.075040.122
47DAP/43DAP1.013860.956
52DAP/47DAP0.990330.93
57DAP/52DAP0.950930.476
57DAP/7DAP1.0531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960750.168
17DAP/reference0.918420.044
27DAP/reference0.960690.146
39DAP/reference0.867380.018
41DAP/reference0.876490.012
42DAP/reference0.905620.046
43DAP/reference0.84430.015
47DAP/reference0.881440.035
52DAP/reference0.881290.033
57DAP/reference0.848780.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096980.36
17DAP/reference1.142450.07
27DAP/reference0.961230.452
39DAP/reference0.914810.144
41DAP/reference0.871940.03
42DAP/reference0.862740.032
43DAP/reference1.212480.023
47DAP/reference0.955950.232
52DAP/reference1.01991
57DAP/reference1.232990.286

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003651
17DAP/reference1.004150.934
27DAP/reference0.890320.03
39DAP/reference0.855920.035
41DAP/reference0.870710.033
42DAP/reference0.775680.071
43DAP/reference0.798430.131
47DAP/reference1.059191
52DAP/reference0.833480.186
57DAP/reference0.552230.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.074940.945
26DAP/20DAP1.050540.839
34DAP/26DAP0.933710.712
51DAP/34DAP1.037730.869
52DAP/51DAP0.961841
53DAP/52DAP1.039240.921
55DAP/53DAP0.999690.951
57DAP/55DAP1.03770.927
62DAP/57DAP1.185640.133
68DAP/62DAP0.782470.245
68DAP/14DAP0.782010.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.704580.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.724180.215
Mature Green Tomato/Ripe Tomato1.296350.523
Immature Eggplant/Mature Eggplant0.682430.077
Ripe Pepper/Ripe Tomato3.568391
Mature Eggplant/Ripe Tomato2.775490.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.045641
1-1-2/M821.039771
12-2/M821.06594N/A
12-4/M820.934820.319
1-3/M820.8118N/A
2-1-1/M820.92991N/A
2-1/M820.94344N/A
2-6/M821.071641
3-2/M821.18115N/A
4-1-1/M82N/AN/A
4-1/M821.13822N/A
4-3-2/M820.918380.487
4-3/M820.709330.72
5-3/M820.978141
6-2/M82N/AN/A
6-3/M821.17596N/A
7-1/M820.99991
7-2/M821.195211
9-3-2/M821.06888N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.121411
IL7-5/WTpooled1.32528N/A
IL7-3/WTpooled1.05351
IL12-4/WTpooled1.049690.891
IL1-4/WTpooled1.003921
WT/WTpooled1.038690.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.062071

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.097190.75
DC3000/delta hrp 6h0.736350.914
DC3000/delta hrp 12h1.108351
DC3000/delta hrp 24h1.03541

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.019680.229
DC3000 delta B/DC3000 delta AB0.921340.456

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.106051
Exp 60h0.982070.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.021111
Var 0h0.367461
Var 12h I row2-row11.0840.654
Var 12h NI row2-row11.099131
Var 36h I row2-row10.946981
Var 36h NI row2-row11.089811
Var 60h I row2-row10.834560.292
Var 60h NI row2-row11.166470.691
Time course 0hI-0hNI0.999691
Time course 12hI-12hNI0.96530.746
Time course 36hI-36hNI0.93570.246
Time course 60hI-60hNI1.095330.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.958630.315
transgenic ySAMdc/azygous control (breaker)0.952841
transgenic ySAMdc/azygous control (red)1.013860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.024820.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.023671

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.738870.172
Manapal/WT (break)1.237130.381
Manapal/WT (red)1.189480.413