Expression of 1-1-3.2.7.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90258 | 0.464 |
27DAP/17DAP | 0.86407 | 0.631 |
39DAP/27DAP | 1.62507 | 0.191 |
41DAP/39DAP | 0.85115 | 0.469 |
42DAP/41DAP | 1.12784 | 1 |
43DAP/42DAP | 0.90152 | 0.801 |
47DAP/43DAP | 0.83913 | 0.555 |
52DAP/47DAP | 1.13697 | 0.883 |
57DAP/52DAP | 0.82119 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.59108 | 0.024 |
17DAP/reference | 0.65406 | 0.007 |
27DAP/reference | 0.72435 | 0.011 |
39DAP/reference | 0.66182 | 0.008 |
41DAP/reference | 0.75233 | 0.01 |
42DAP/reference | 0.8108 | 0.005 |
43DAP/reference | 0.78535 | 0.017 |
47DAP/reference | 0.75563 | 0.001 |
52DAP/reference | 0.87968 | 0.071 |
57DAP/reference | 1.04119 | 0.853 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28205 | 0.154 |
27DAP/17DAP | 0.92123 | 0.782 |
39DAP/27DAP | 0.88159 | 0.469 |
41DAP/39DAP | 1.15874 | 0.909 |
42DAP/41DAP | 1.15255 | 0.415 |
43DAP/42DAP | 0.81139 | 0.06 |
47DAP/43DAP | 0.8692 | 0.418 |
52DAP/47DAP | 2.0926 | 0.048 |
57DAP/52DAP | 2.21444 | 0.045 |
57DAP/7DAP | 1.74493 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72561 | 0.07 |
17DAP/reference | 0.74373 | 0.014 |
27DAP/reference | 0.93323 | 0.171 |
39DAP/reference | 0.74448 | 0.011 |
41DAP/reference | 0.81248 | 0.01 |
42DAP/reference | 0.82119 | 0.01 |
43DAP/reference | 0.76744 | 0.011 |
47DAP/reference | 0.82775 | 0.101 |
52DAP/reference | 0.71799 | 0.009 |
57DAP/reference | 0.70887 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.52685 | 0.005 |
17DAP/reference | 0.52333 | 0.004 |
27DAP/reference | 0.77128 | 0.032 |
39DAP/reference | 0.77443 | 0.037 |
41DAP/reference | 0.95872 | 0.357 |
42DAP/reference | 1.02529 | 1 |
43DAP/reference | 0.68328 | 0.01 |
47DAP/reference | 0.88987 | 0.11 |
52DAP/reference | 0.70366 | 0.004 |
57DAP/reference | 0.48985 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71809 | 0.027 |
17DAP/reference | 0.78974 | 0.186 |
27DAP/reference | 0.71537 | 0.025 |
39DAP/reference | 0.71224 | 0.006 |
41DAP/reference | 0.88534 | 0.185 |
42DAP/reference | 1.09344 | 0.556 |
43DAP/reference | 0.83868 | 0.048 |
47DAP/reference | 0.83933 | 0.183 |
52DAP/reference | 0.74243 | 0.076 |
57DAP/reference | 1.16251 | 0.279 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96873 | 1 |
26DAP/20DAP | 1.96672 | 0.744 |
34DAP/26DAP | 2.73864 | 1 |
51DAP/34DAP | 1.22105 | 0.946 |
52DAP/51DAP | 4.36967 | 0.033 |
53DAP/52DAP | 0.62843 | |
55DAP/53DAP | 1.40938 | 0.537 |
57DAP/55DAP | 0.5557 | 0.058 |
62DAP/57DAP | 1.0484 | 1 |
68DAP/62DAP | 2.59087 | 0.242 |
68DAP/14DAP | 3.12815 | 0.042 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.27149 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.37671 | 0.149 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.70729 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.96259 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.19189 | 0.742 |
1-1-2/M82 | 1.02053 | 1 |
12-2/M82 | 1.07998 | 1 |
12-4/M82 | 1.13777 | 1 |
1-3/M82 | 1.45259 | 1 |
2-1-1/M82 | 0.95744 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94104 | 1 |
3-2/M82 | 1.01464 | 1 |
4-1-1/M82 | 0.84642 | 1 |
4-1/M82 | 0.61663 | 1 |
4-3-2/M82 | 1.29728 | 0.508 |
4-3/M82 | 1.1835 | 0.268 |
5-3/M82 | 1.13098 | 0.467 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.98644 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.00681 | 1 |
9-3-2/M82 | 1.30284 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.95498 | |
IL7-3/WTpooled | 0.8437 | 0.418 |
IL12-4/WTpooled | 1.18813 | |
IL1-4/WTpooled | 1.2382 | 1 |
WT/WTpooled | 1.03145 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04452 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05027 | 0.629 |
DC3000/delta hrp 6h | 0.99874 | 0.95 |
DC3000/delta hrp 12h | 0.93483 | 1 |
DC3000/delta hrp 24h | 0.99873 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.31529 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.36791 | 0.137 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.31781 | 1 |
Exp 36h | 1.75848 | 0.693 |
Exp 60h | 1.33153 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08332 | 1 |
Var 0h | 0.73912 | 0.933 |
Var 12h I row2-row1 | 0.90319 | 0.338 |
Var 12h NI row2-row1 | 1.32295 | 0.281 |
Var 36h I row2-row1 | 1.35733 | 0.309 |
Var 36h NI row2-row1 | 0.72929 | 0.478 |
Var 60h I row2-row1 | 1.01142 | 1 |
Var 60h NI row2-row1 | 0.79439 | 0.866 |
Time course 0hI-0hNI | 0.93038 | 0.609 |
Time course 12hI-12hNI | 1.07532 | 0.854 |
Time course 36hI-36hNI | 1.64831 | 0.008 |
Time course 60hI-60hNI | 2.05738 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.20811 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 3.04575 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.91741 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99668 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76108 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.40822 | 1 |
Manapal/WT (break) | 0.69311 | 1 |
Manapal/WT (red) | 0.44702 | 0.181 |
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