Expression of 1-1-3.2.7.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.902580.464
27DAP/17DAP0.864070.631
39DAP/27DAP1.625070.191
41DAP/39DAP0.851150.469
42DAP/41DAP1.127841
43DAP/42DAP0.901520.801
47DAP/43DAP0.839130.555
52DAP/47DAP1.136970.883
57DAP/52DAP0.821190.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.591080.024
17DAP/reference0.654060.007
27DAP/reference0.724350.011
39DAP/reference0.661820.008
41DAP/reference0.752330.01
42DAP/reference0.81080.005
43DAP/reference0.785350.017
47DAP/reference0.755630.001
52DAP/reference0.879680.071
57DAP/reference1.041190.853

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.282050.154
27DAP/17DAP0.921230.782
39DAP/27DAP0.881590.469
41DAP/39DAP1.158740.909
42DAP/41DAP1.152550.415
43DAP/42DAP0.811390.06
47DAP/43DAP0.86920.418
52DAP/47DAP2.09260.048
57DAP/52DAP2.214440.045
57DAP/7DAP1.744931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.725610.07
17DAP/reference0.743730.014
27DAP/reference0.933230.171
39DAP/reference0.744480.011
41DAP/reference0.812480.01
42DAP/reference0.821190.01
43DAP/reference0.767440.011
47DAP/reference0.827750.101
52DAP/reference0.717990.009
57DAP/reference0.708870.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.526850.005
17DAP/reference0.523330.004
27DAP/reference0.771280.032
39DAP/reference0.774430.037
41DAP/reference0.958720.357
42DAP/reference1.025291
43DAP/reference0.683280.01
47DAP/reference0.889870.11
52DAP/reference0.703660.004
57DAP/reference0.489850.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.718090.027
17DAP/reference0.789740.186
27DAP/reference0.715370.025
39DAP/reference0.712240.006
41DAP/reference0.885340.185
42DAP/reference1.093440.556
43DAP/reference0.838680.048
47DAP/reference0.839330.183
52DAP/reference0.742430.076
57DAP/reference1.162510.279

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.968731
26DAP/20DAP1.966720.744
34DAP/26DAP2.738641
51DAP/34DAP1.221050.946
52DAP/51DAP4.369670.033
53DAP/52DAP0.62843
55DAP/53DAP1.409380.537
57DAP/55DAP0.55570.058
62DAP/57DAP1.04841
68DAP/62DAP2.590870.242
68DAP/14DAP3.128150.042

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.271490.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.376710.149
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.707290.293
Mature Eggplant/Ripe Tomato0.962591

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.191890.742
1-1-2/M821.020531
12-2/M821.079981
12-4/M821.137771
1-3/M821.452591
2-1-1/M820.957441
2-1/M82N/AN/A
2-6/M820.941041
3-2/M821.014641
4-1-1/M820.846421
4-1/M820.616631
4-3-2/M821.297280.508
4-3/M821.18350.268
5-3/M821.130980.467
6-2/M82N/AN/A
6-3/M820.986441
7-1/M82N/AN/A
7-2/M821.006811
9-3-2/M821.302840.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.95498
IL7-3/WTpooled0.84370.418
IL12-4/WTpooled1.18813
IL1-4/WTpooled1.23821
WT/WTpooled1.031451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.044520.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.050270.629
DC3000/delta hrp 6h0.998740.95
DC3000/delta hrp 12h0.934831
DC3000/delta hrp 24h0.998731

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.315290.042
DC3000 delta B/DC3000 delta AB1.367910.137

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.317811
Exp 36h1.758480.693
Exp 60h1.331530.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.083321
Var 0h0.739120.933
Var 12h I row2-row10.903190.338
Var 12h NI row2-row11.322950.281
Var 36h I row2-row11.357330.309
Var 36h NI row2-row10.729290.478
Var 60h I row2-row11.011421
Var 60h NI row2-row10.794390.866
Time course 0hI-0hNI0.930380.609
Time course 12hI-12hNI1.075320.854
Time course 36hI-36hNI1.648310.008
Time course 60hI-60hNI2.057380.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.208110.612
transgenic ySAMdc/azygous control (breaker)3.045750.248
transgenic ySAMdc/azygous control (red)0.917411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996680.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.761080.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.408221
Manapal/WT (break)0.693111
Manapal/WT (red)0.447020.181