Expression of 1-1-3.2.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.171380.512
27DAP/17DAP1.055280.885
39DAP/27DAP0.698060.392
41DAP/39DAP0.867070.49
42DAP/41DAP1.351460.696
43DAP/42DAP0.903460.761
47DAP/43DAP1.036410.95
52DAP/47DAP1.010760.916
57DAP/52DAP0.949760.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.974140.55
17DAP/reference1.046080.606
27DAP/reference1.048620.735
39DAP/reference0.970820.587
41DAP/reference1.112680.287
42DAP/reference0.880340.033
43DAP/reference1.006681
47DAP/reference0.945980.279
52DAP/reference0.882650.058
57DAP/reference1.104310.132

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.458150.062
27DAP/17DAP1.048090.942
39DAP/27DAP1.053120.728
41DAP/39DAP1.06080.727
42DAP/41DAP1.032520.947
43DAP/42DAP0.833730.025
47DAP/43DAP0.987730.933
52DAP/47DAP1.468560.121
57DAP/52DAP1.205880.427
57DAP/7DAP1.616761

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.881820.203
17DAP/reference1.061110.688
27DAP/reference1.040381
39DAP/reference1.091530.96
41DAP/reference0.956210.311
42DAP/reference1.097750.534
43DAP/reference0.975490.459
47DAP/reference1.061430.915
52DAP/reference0.922990.332
57DAP/reference1.000480.648

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.93230.286
17DAP/reference0.962330.461
27DAP/reference1.055340.507
39DAP/reference0.964610.455
41DAP/reference1.668480.122
42DAP/reference1.133930.433
43DAP/reference1.600890.018
47DAP/reference1.000510.714
52DAP/reference1.033071
57DAP/reference0.9170.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.847360.063
17DAP/reference1.127950.333
27DAP/reference1.196880.072
39DAP/reference0.946790.36
41DAP/reference0.979490.618
42DAP/reference0.895860.22
43DAP/reference0.85860.12
47DAP/reference0.927670.278
52DAP/reference1.216820.623
57DAP/reference1.079240.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993021
26DAP/20DAP1.576060.101
34DAP/26DAP0.894340.675
51DAP/34DAP1.177030.524
52DAP/51DAP0.838760.151
53DAP/52DAP1.302210.261
55DAP/53DAP0.864930.417
57DAP/55DAP1.594680.584
62DAP/57DAP0.847730.162
68DAP/62DAP1.721180.124
68DAP/14DAP1.938560.035

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.085370.737

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.66379
Mature Green Tomato/Ripe Tomato1.504420.021
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.432891
Mature Eggplant/Ripe Tomato1.294571

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.055910.591
1-1-2/M820.90606
12-2/M821.23488
12-4/M821.148321
1-3/M820.95951
2-1-1/M821.18125
2-1/M82N/AN/A
2-6/M820.7781
3-2/M820.93717
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.002471
4-3/M820.789030.72
5-3/M821.075361
6-2/M82N/AN/A
6-3/M820.84813
7-1/M821.27382
7-2/M821.03733
9-3-2/M820.965941

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.1275
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.17044
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooled1.18769

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.025430.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064770.921
DC3000/delta hrp 6h1.09551
DC3000/delta hrp 12h0.985211
DC3000/delta hrp 24h0.951470.642

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.43534
DC3000 delta B/DC3000 delta AB1.126810.443

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.96160.943
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.969381
Var 0h0.741380.933
Var 12h I row2-row11.244340.473
Var 12h NI row2-row11.131030.235
Var 36h I row2-row10.949061
Var 36h NI row2-row10.993120.852
Var 60h I row2-row10.836310.285
Var 60h NI row2-row11.00731
Time course 0hI-0hNI0.958440.577
Time course 12hI-12hNI1.019610.867
Time course 36hI-36hNI1.030810.58
Time course 60hI-60hNI1.088050.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.899780.246
transgenic ySAMdc/azygous control (breaker)1.027571
transgenic ySAMdc/azygous control (red)1.007581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98760.353

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.779270.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.556650.172
Manapal/WT (break)0.975171
Manapal/WT (red)1.14741