Expression of 1-1-3.2.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17138 | 0.512 |
27DAP/17DAP | 1.05528 | 0.885 |
39DAP/27DAP | 0.69806 | 0.392 |
41DAP/39DAP | 0.86707 | 0.49 |
42DAP/41DAP | 1.35146 | 0.696 |
43DAP/42DAP | 0.90346 | 0.761 |
47DAP/43DAP | 1.03641 | 0.95 |
52DAP/47DAP | 1.01076 | 0.916 |
57DAP/52DAP | 0.94976 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97414 | 0.55 |
17DAP/reference | 1.04608 | 0.606 |
27DAP/reference | 1.04862 | 0.735 |
39DAP/reference | 0.97082 | 0.587 |
41DAP/reference | 1.11268 | 0.287 |
42DAP/reference | 0.88034 | 0.033 |
43DAP/reference | 1.00668 | 1 |
47DAP/reference | 0.94598 | 0.279 |
52DAP/reference | 0.88265 | 0.058 |
57DAP/reference | 1.10431 | 0.132 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.45815 | 0.062 |
27DAP/17DAP | 1.04809 | 0.942 |
39DAP/27DAP | 1.05312 | 0.728 |
41DAP/39DAP | 1.0608 | 0.727 |
42DAP/41DAP | 1.03252 | 0.947 |
43DAP/42DAP | 0.83373 | 0.025 |
47DAP/43DAP | 0.98773 | 0.933 |
52DAP/47DAP | 1.46856 | 0.121 |
57DAP/52DAP | 1.20588 | 0.427 |
57DAP/7DAP | 1.61676 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88182 | 0.203 |
17DAP/reference | 1.06111 | 0.688 |
27DAP/reference | 1.04038 | 1 |
39DAP/reference | 1.09153 | 0.96 |
41DAP/reference | 0.95621 | 0.311 |
42DAP/reference | 1.09775 | 0.534 |
43DAP/reference | 0.97549 | 0.459 |
47DAP/reference | 1.06143 | 0.915 |
52DAP/reference | 0.92299 | 0.332 |
57DAP/reference | 1.00048 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9323 | 0.286 |
17DAP/reference | 0.96233 | 0.461 |
27DAP/reference | 1.05534 | 0.507 |
39DAP/reference | 0.96461 | 0.455 |
41DAP/reference | 1.66848 | 0.122 |
42DAP/reference | 1.13393 | 0.433 |
43DAP/reference | 1.60089 | 0.018 |
47DAP/reference | 1.00051 | 0.714 |
52DAP/reference | 1.03307 | 1 |
57DAP/reference | 0.917 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84736 | 0.063 |
17DAP/reference | 1.12795 | 0.333 |
27DAP/reference | 1.19688 | 0.072 |
39DAP/reference | 0.94679 | 0.36 |
41DAP/reference | 0.97949 | 0.618 |
42DAP/reference | 0.89586 | 0.22 |
43DAP/reference | 0.8586 | 0.12 |
47DAP/reference | 0.92767 | 0.278 |
52DAP/reference | 1.21682 | 0.623 |
57DAP/reference | 1.07924 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99302 | 1 |
26DAP/20DAP | 1.57606 | 0.101 |
34DAP/26DAP | 0.89434 | 0.675 |
51DAP/34DAP | 1.17703 | 0.524 |
52DAP/51DAP | 0.83876 | 0.151 |
53DAP/52DAP | 1.30221 | 0.261 |
55DAP/53DAP | 0.86493 | 0.417 |
57DAP/55DAP | 1.59468 | 0.584 |
62DAP/57DAP | 0.84773 | 0.162 |
68DAP/62DAP | 1.72118 | 0.124 |
68DAP/14DAP | 1.93856 | 0.035 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08537 | 0.737 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.66379 | |
Mature Green Tomato/Ripe Tomato | 1.50442 | 0.021 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.43289 | 1 |
Mature Eggplant/Ripe Tomato | 1.29457 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05591 | 0.591 |
1-1-2/M82 | 0.90606 | |
12-2/M82 | 1.23488 | |
12-4/M82 | 1.14832 | 1 |
1-3/M82 | 0.95951 | |
2-1-1/M82 | 1.18125 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.778 | 1 |
3-2/M82 | 0.93717 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.00247 | 1 |
4-3/M82 | 0.78903 | 0.72 |
5-3/M82 | 1.07536 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.84813 | |
7-1/M82 | 1.27382 | |
7-2/M82 | 1.03733 | |
9-3-2/M82 | 0.96594 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1275 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.17044 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.18769 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02543 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06477 | 0.921 |
DC3000/delta hrp 6h | 1.0955 | 1 |
DC3000/delta hrp 12h | 0.98521 | 1 |
DC3000/delta hrp 24h | 0.95147 | 0.642 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.43534 | |
DC3000 delta B/DC3000 delta AB | 1.12681 | 0.443 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.9616 | 0.943 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96938 | 1 |
Var 0h | 0.74138 | 0.933 |
Var 12h I row2-row1 | 1.24434 | 0.473 |
Var 12h NI row2-row1 | 1.13103 | 0.235 |
Var 36h I row2-row1 | 0.94906 | 1 |
Var 36h NI row2-row1 | 0.99312 | 0.852 |
Var 60h I row2-row1 | 0.83631 | 0.285 |
Var 60h NI row2-row1 | 1.0073 | 1 |
Time course 0hI-0hNI | 0.95844 | 0.577 |
Time course 12hI-12hNI | 1.01961 | 0.867 |
Time course 36hI-36hNI | 1.03081 | 0.58 |
Time course 60hI-60hNI | 1.08805 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89978 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.02757 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00758 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9876 | 0.353 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77927 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.55665 | 0.172 |
Manapal/WT (break) | 0.97517 | 1 |
Manapal/WT (red) | 1.1474 | 1 |
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