Expression of 1-1-3.3.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.794570.244
27DAP/17DAP0.846050.622
39DAP/27DAP1.630320.063
41DAP/39DAP0.679190.078
42DAP/41DAP1.142470.903
43DAP/42DAP1.000140.937
47DAP/43DAP0.825080.433
52DAP/47DAP1.002970.89
57DAP/52DAP1.461670.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.316910.025
17DAP/reference1.016111
27DAP/reference0.889740.152
39DAP/reference1.097230.524
41DAP/reference1.149650.312
42DAP/reference1.634970.001
43DAP/reference1.136940.078
47DAP/reference1.490830.001
52DAP/reference1.066141
57DAP/reference1.183740.105

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.755060.065
27DAP/17DAP1.191980.2
39DAP/27DAP0.93810.529
41DAP/39DAP1.483020.023
42DAP/41DAP0.806180.012
43DAP/42DAP1.006071
47DAP/43DAP1.115870.376
52DAP/47DAP0.763350.132
57DAP/52DAP1.005310.857
57DAP/7DAP0.965831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.759650.024
17DAP/reference1.228990.018
27DAP/reference1.72510.01
39DAP/reference1.672660.006
41DAP/reference1.659770.009
42DAP/reference1.830560.009
43DAP/reference1.56840.007
47DAP/reference1.435630.015
52DAP/reference1.997170.007
57DAP/reference1.705330.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.237960.55
17DAP/reference1.385170.035
27DAP/reference1.677130.075
39DAP/reference1.258380.16
41DAP/reference1.237940.318
42DAP/reference1.329370.061
43DAP/reference1.107950.801
47DAP/reference1.459960.017
52DAP/reference0.900320.066
57DAP/reference1.128850.64

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.608920.017
17DAP/reference1.1590.261
27DAP/reference1.143980.12
39DAP/reference1.416070.013
41DAP/reference1.314910.01
42DAP/reference1.752170.008
43DAP/reference1.797780.021
47DAP/reference1.235120.016
52DAP/reference1.594090.036
57DAP/reference1.745860.015

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.223970.916
26DAP/20DAP1.760670.2
34DAP/26DAP1.02531
51DAP/34DAP0.795040.152
52DAP/51DAP0.71780.151
53DAP/52DAP1.060180.868
55DAP/53DAP0.836830.303
57DAP/55DAP1.49620.094
62DAP/57DAP1.089170.569
68DAP/62DAP0.931450.747
68DAP/14DAP1.100310.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.282270.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.316850.068
Mature Green Tomato/Ripe Tomato0.757970.287
Immature Eggplant/Mature Eggplant0.983991
Ripe Pepper/Ripe Tomato0.797790.224
Mature Eggplant/Ripe Tomato0.826670.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.019341
1-1-2/M821.514871
12-2/M820.85470.955
12-4/M821.108681
1-3/M822.984890.479
2-1-1/M820.929431
2-1/M820.56758
2-6/M821.170910.594
3-2/M821.28921
4-1-1/M821.186341
4-1/M820.65032
4-3-2/M821.811670.284
4-3/M821.613770.268
5-3/M821.154360.572
6-2/M821.179461
6-3/M821.63986
7-1/M820.74497
7-2/M821.335490.385
9-3-2/M821.413631

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.300360.362
IL12-4/WTpooled1.062031
IL1-4/WTpooled1.12416
WT/WTpooled0.985681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.008121

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.117280.875
DC3000/delta hrp 6h1.043361
DC3000/delta hrp 12h1.056521
DC3000/delta hrp 24h1.252030.254

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.150940.229
DC3000 delta B/DC3000 delta AB0.933240.558

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.904141
Exp 36h1.317281
Exp 60h1.088691

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.962471
Var 0h1.171910.936
Var 12h I row2-row10.944370.77
Var 12h NI row2-row11.337450.34
Var 36h I row2-row11.415860.742
Var 36h NI row2-row10.75110.375
Var 60h I row2-row11.025881
Var 60h NI row2-row10.735060.292
Time course 0hI-0hNI0.852060.114
Time course 12hI-12hNI0.998521
Time course 36hI-36hNI1.266070.401
Time course 60hI-60hNI1.311970.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.980650.529
transgenic ySAMdc/azygous control (breaker)1.687990.178
transgenic ySAMdc/azygous control (red)1.168370.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.128470.066

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.789970.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.774631
Manapal/WT (break)0.954071
Manapal/WT (red)1.022431