Expression of 1-1-3.3.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79457 | 0.244 |
27DAP/17DAP | 0.84605 | 0.622 |
39DAP/27DAP | 1.63032 | 0.063 |
41DAP/39DAP | 0.67919 | 0.078 |
42DAP/41DAP | 1.14247 | 0.903 |
43DAP/42DAP | 1.00014 | 0.937 |
47DAP/43DAP | 0.82508 | 0.433 |
52DAP/47DAP | 1.00297 | 0.89 |
57DAP/52DAP | 1.46167 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31691 | 0.025 |
17DAP/reference | 1.01611 | 1 |
27DAP/reference | 0.88974 | 0.152 |
39DAP/reference | 1.09723 | 0.524 |
41DAP/reference | 1.14965 | 0.312 |
42DAP/reference | 1.63497 | 0.001 |
43DAP/reference | 1.13694 | 0.078 |
47DAP/reference | 1.49083 | 0.001 |
52DAP/reference | 1.06614 | 1 |
57DAP/reference | 1.18374 | 0.105 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75506 | 0.065 |
27DAP/17DAP | 1.19198 | 0.2 |
39DAP/27DAP | 0.9381 | 0.529 |
41DAP/39DAP | 1.48302 | 0.023 |
42DAP/41DAP | 0.80618 | 0.012 |
43DAP/42DAP | 1.00607 | 1 |
47DAP/43DAP | 1.11587 | 0.376 |
52DAP/47DAP | 0.76335 | 0.132 |
57DAP/52DAP | 1.00531 | 0.857 |
57DAP/7DAP | 0.96583 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.75965 | 0.024 |
17DAP/reference | 1.22899 | 0.018 |
27DAP/reference | 1.7251 | 0.01 |
39DAP/reference | 1.67266 | 0.006 |
41DAP/reference | 1.65977 | 0.009 |
42DAP/reference | 1.83056 | 0.009 |
43DAP/reference | 1.5684 | 0.007 |
47DAP/reference | 1.43563 | 0.015 |
52DAP/reference | 1.99717 | 0.007 |
57DAP/reference | 1.70533 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23796 | 0.55 |
17DAP/reference | 1.38517 | 0.035 |
27DAP/reference | 1.67713 | 0.075 |
39DAP/reference | 1.25838 | 0.16 |
41DAP/reference | 1.23794 | 0.318 |
42DAP/reference | 1.32937 | 0.061 |
43DAP/reference | 1.10795 | 0.801 |
47DAP/reference | 1.45996 | 0.017 |
52DAP/reference | 0.90032 | 0.066 |
57DAP/reference | 1.12885 | 0.64 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.60892 | 0.017 |
17DAP/reference | 1.159 | 0.261 |
27DAP/reference | 1.14398 | 0.12 |
39DAP/reference | 1.41607 | 0.013 |
41DAP/reference | 1.31491 | 0.01 |
42DAP/reference | 1.75217 | 0.008 |
43DAP/reference | 1.79778 | 0.021 |
47DAP/reference | 1.23512 | 0.016 |
52DAP/reference | 1.59409 | 0.036 |
57DAP/reference | 1.74586 | 0.015 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22397 | 0.916 |
26DAP/20DAP | 1.76067 | 0.2 |
34DAP/26DAP | 1.0253 | 1 |
51DAP/34DAP | 0.79504 | 0.152 |
52DAP/51DAP | 0.7178 | 0.151 |
53DAP/52DAP | 1.06018 | 0.868 |
55DAP/53DAP | 0.83683 | 0.303 |
57DAP/55DAP | 1.4962 | 0.094 |
62DAP/57DAP | 1.08917 | 0.569 |
68DAP/62DAP | 0.93145 | 0.747 |
68DAP/14DAP | 1.10031 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.28227 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.31685 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.75797 | 0.287 |
Immature Eggplant/Mature Eggplant | 0.98399 | 1 |
Ripe Pepper/Ripe Tomato | 0.79779 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.82667 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01934 | 1 |
1-1-2/M82 | 1.51487 | 1 |
12-2/M82 | 0.8547 | 0.955 |
12-4/M82 | 1.10868 | 1 |
1-3/M82 | 2.98489 | 0.479 |
2-1-1/M82 | 0.92943 | 1 |
2-1/M82 | 0.56758 | |
2-6/M82 | 1.17091 | 0.594 |
3-2/M82 | 1.28921 | |
4-1-1/M82 | 1.18634 | 1 |
4-1/M82 | 0.65032 | |
4-3-2/M82 | 1.81167 | 0.284 |
4-3/M82 | 1.61377 | 0.268 |
5-3/M82 | 1.15436 | 0.572 |
6-2/M82 | 1.17946 | 1 |
6-3/M82 | 1.63986 | |
7-1/M82 | 0.74497 | |
7-2/M82 | 1.33549 | 0.385 |
9-3-2/M82 | 1.41363 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.30036 | 0.362 |
IL12-4/WTpooled | 1.06203 | 1 |
IL1-4/WTpooled | 1.12416 | |
WT/WTpooled | 0.98568 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00812 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11728 | 0.875 |
DC3000/delta hrp 6h | 1.04336 | 1 |
DC3000/delta hrp 12h | 1.05652 | 1 |
DC3000/delta hrp 24h | 1.25203 | 0.254 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15094 | 0.229 |
DC3000 delta B/DC3000 delta AB | 0.93324 | 0.558 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90414 | 1 |
Exp 36h | 1.31728 | 1 |
Exp 60h | 1.08869 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96247 | 1 |
Var 0h | 1.17191 | 0.936 |
Var 12h I row2-row1 | 0.94437 | 0.77 |
Var 12h NI row2-row1 | 1.33745 | 0.34 |
Var 36h I row2-row1 | 1.41586 | 0.742 |
Var 36h NI row2-row1 | 0.7511 | 0.375 |
Var 60h I row2-row1 | 1.02588 | 1 |
Var 60h NI row2-row1 | 0.73506 | 0.292 |
Time course 0hI-0hNI | 0.85206 | 0.114 |
Time course 12hI-12hNI | 0.99852 | 1 |
Time course 36hI-36hNI | 1.26607 | 0.401 |
Time course 60hI-60hNI | 1.31197 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98065 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.68799 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.16837 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12847 | 0.066 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78997 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77463 | 1 |
Manapal/WT (break) | 0.95407 | 1 |
Manapal/WT (red) | 1.02243 | 1 |
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