Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.3.1.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.45796	0.798
27DAP/17DAP	0.64925	0.223
39DAP/27DAP	1.1904	0.658
41DAP/39DAP	1.85336	0.54
42DAP/41DAP	1.04334	1
43DAP/42DAP	0.83125	0.925
47DAP/43DAP	1.72122	0.776
52DAP/47DAP	1.13534	0.876
57DAP/52DAP	2.42677	0.977

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.42587	0.9
17DAP/reference	1.05534	0.399
27DAP/reference	1.67123	0.106
39DAP/reference	0.78835	0.35
41DAP/reference	1.32429	0.047
42DAP/reference	1.13965	0.264
43DAP/reference	1.07451	0.758
47DAP/reference	1.15714	0.478
52DAP/reference	0.77352	0.012
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.08554	1
27DAP/17DAP	1.06801
39DAP/27DAP	0.95677	0.925
41DAP/39DAP	N/A	N/A
42DAP/41DAP	1.07433	1
43DAP/42DAP	0.91838	0.684
47DAP/43DAP	1.84476	0.758
52DAP/47DAP	1.26956	0.645
57DAP/52DAP	N/A	N/A
57DAP/7DAP	1.25171	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.78549	0.077
17DAP/reference	0.80379	0.013
27DAP/reference	0.92465	0.094
39DAP/reference	0.7768	0.013
41DAP/reference	0.70955	0.018
42DAP/reference	0.68545	0.011
43DAP/reference	0.64875	0.025
47DAP/reference	0.75469	0.222
52DAP/reference	0.72551	0.013
57DAP/reference	0.73202	0.015

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07004	0.852
17DAP/reference	2.36228	0.367
27DAP/reference	1.28268	0.156
39DAP/reference	1.62317
41DAP/reference	2.24972	0.525
42DAP/reference	1.16697	0.38
43DAP/reference	1.74554	0.021
47DAP/reference	1.42862	0.084
52DAP/reference	0.86154	0.22
57DAP/reference	1.38215	1

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.80579	0.063
17DAP/reference	1.18849	0.558
27DAP/reference	0.79826	0.035
39DAP/reference	0.81652	0.04
41DAP/reference	0.93202	0.167
42DAP/reference	0.87537	0.22
43DAP/reference	1.18562	0.796
47DAP/reference	0.87425	0.12
52DAP/reference	1.92201	0.509
57DAP/reference	0.90772	0.299

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.7728	0.966
26DAP/20DAP	1.95981	0.421
34DAP/26DAP	1.18283
51DAP/34DAP	N/A	N/A
52DAP/51DAP	1.33345
53DAP/52DAP	0.79706	0.455
55DAP/53DAP	0.88838	0.43
57DAP/55DAP	0.63853
62DAP/57DAP	1.56734
68DAP/62DAP	1.25446
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.05043	0.774

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.1885	0.277
IL2-6/WTpooled	0.69907	0.383
IL7-5/WTpooled	0.78749
IL7-3/WTpooled	0.89543	0.298
IL12-4/WTpooled	1.09069	0.673
IL1-4/WTpooled	0.88694	0.562
WT/WTpooled	1.03409	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.96524	1
Manapal/WT (red)	N/A	N/A