Expression of 1-1-3.3.1.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.891050.133
27DAP/17DAP1.136960.847
39DAP/27DAP1.61990.198
41DAP/39DAP0.7590.22
42DAP/41DAP1.018311
43DAP/42DAP1.176990.829
47DAP/43DAP1.512360.239
52DAP/47DAP1.057890.918
57DAP/52DAP0.93840.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.718320.027
17DAP/reference1.256210.248
27DAP/reference1.877380.011
39DAP/reference1.584490.018
41DAP/reference1.400950.073
42DAP/reference1.361650.001
43DAP/reference1.88450.007
47DAP/reference3.908580.001
52DAP/reference2.52060.007
57DAP/reference1.946190.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.696980.04
27DAP/17DAP0.920170.614
39DAP/27DAP1.134980.388
41DAP/39DAP1.028271
42DAP/41DAP1.009480.929
43DAP/42DAP0.771720.022
47DAP/43DAP0.980090.909
52DAP/47DAP1.204350.397
57DAP/52DAP1.406640.052
57DAP/7DAP1.343471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896620.129
17DAP/reference0.888470.094
27DAP/reference0.926150.101
39DAP/reference1.061380.267
41DAP/reference0.85440.05
42DAP/reference0.913510.189
43DAP/reference0.939350.241
47DAP/reference1.369710.029
52DAP/reference0.97470.477
57DAP/reference1.060110.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.758160.035
17DAP/reference0.967740.51
27DAP/reference1.169840.212
39DAP/reference1.424440.021
41DAP/reference0.975070.422
42DAP/reference1.206920.076
43DAP/reference1.243150.117
47DAP/reference1.462530.01
52DAP/reference1.126610.043
57DAP/reference1.050210.868

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.760080.029
17DAP/reference0.871080.313
27DAP/reference0.786160.025
39DAP/reference0.918060.033
41DAP/reference0.971610.512
42DAP/reference1.249650.06
43DAP/reference1.305730.084
47DAP/reference2.126680.007
52DAP/reference2.229680.029
57DAP/reference3.964060.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.199360.945
26DAP/20DAP1.309810.223
34DAP/26DAP1.098430.819
51DAP/34DAP0.959350.743
52DAP/51DAP0.777580.079
53DAP/52DAP1.139860.678
55DAP/53DAP0.949050.698
57DAP/55DAP1.226980.525
62DAP/57DAP0.880620.681
68DAP/62DAP1.043521
68DAP/14DAP1.40480.023

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.042650.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.152760.058
Mature Green Tomato/Ripe Tomato0.7710.446
Immature Eggplant/Mature Eggplant1.293760.058
Ripe Pepper/Ripe Tomato0.708310.224
Mature Eggplant/Ripe Tomato0.650140.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.227720.742
1-1-2/M821.67348
12-2/M821.147681
12-4/M821.222541
1-3/M821.569760.248
2-1-1/M821.147960.764
2-1/M820.935041
2-6/M821.000281
3-2/M821.167830.717
4-1-1/M821.26950.968
4-1/M822.33170.853
4-3-2/M821.307330.508
4-3/M821.185690.268
5-3/M820.963811
6-2/M820.835110.497
6-3/M821.026781
7-1/M821.030690.87
7-2/M821.070231
9-3-2/M821.200011

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.164050.365
IL2-6/WTpooled0.855660.348
IL7-5/WTpooled0.947371
IL7-3/WTpooled1.196181
IL12-4/WTpooled1.249150.557
IL1-4/WTpooled1.116921
WT/WTpooled1.015971

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.051230.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.137310.75
DC3000/delta hrp 6h1.014491
DC3000/delta hrp 12h0.954681
DC3000/delta hrp 24h1.007381

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.221420.384
DC3000 delta B/DC3000 delta AB1.19190.292

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.032141
Exp 36h1.319670.489
Exp 60h1.381260.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.95591
Var 0h0.986131
Var 12h I row2-row11.032850.654
Var 12h NI row2-row11.01711
Var 36h I row2-row10.996391
Var 36h NI row2-row10.992240.852
Var 60h I row2-row10.913360.832
Var 60h NI row2-row10.863960.572
Time course 0hI-0hNI0.987690.988
Time course 12hI-12hNI0.992371
Time course 36hI-36hNI1.122680.07
Time course 60hI-60hNI1.599440.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.936280.362
transgenic ySAMdc/azygous control (breaker)1.178770.248
transgenic ySAMdc/azygous control (red)1.008511

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.213280.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.708310.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.70530.172
Manapal/WT (break)0.820651
Manapal/WT (red)1.160020.164