Expression of 1-1-3.3.1.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.89105 | 0.133 |
27DAP/17DAP | 1.13696 | 0.847 |
39DAP/27DAP | 1.6199 | 0.198 |
41DAP/39DAP | 0.759 | 0.22 |
42DAP/41DAP | 1.01831 | 1 |
43DAP/42DAP | 1.17699 | 0.829 |
47DAP/43DAP | 1.51236 | 0.239 |
52DAP/47DAP | 1.05789 | 0.918 |
57DAP/52DAP | 0.9384 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71832 | 0.027 |
17DAP/reference | 1.25621 | 0.248 |
27DAP/reference | 1.87738 | 0.011 |
39DAP/reference | 1.58449 | 0.018 |
41DAP/reference | 1.40095 | 0.073 |
42DAP/reference | 1.36165 | 0.001 |
43DAP/reference | 1.8845 | 0.007 |
47DAP/reference | 3.90858 | 0.001 |
52DAP/reference | 2.5206 | 0.007 |
57DAP/reference | 1.94619 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.69698 | 0.04 |
27DAP/17DAP | 0.92017 | 0.614 |
39DAP/27DAP | 1.13498 | 0.388 |
41DAP/39DAP | 1.02827 | 1 |
42DAP/41DAP | 1.00948 | 0.929 |
43DAP/42DAP | 0.77172 | 0.022 |
47DAP/43DAP | 0.98009 | 0.909 |
52DAP/47DAP | 1.20435 | 0.397 |
57DAP/52DAP | 1.40664 | 0.052 |
57DAP/7DAP | 1.34347 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89662 | 0.129 |
17DAP/reference | 0.88847 | 0.094 |
27DAP/reference | 0.92615 | 0.101 |
39DAP/reference | 1.06138 | 0.267 |
41DAP/reference | 0.8544 | 0.05 |
42DAP/reference | 0.91351 | 0.189 |
43DAP/reference | 0.93935 | 0.241 |
47DAP/reference | 1.36971 | 0.029 |
52DAP/reference | 0.9747 | 0.477 |
57DAP/reference | 1.06011 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75816 | 0.035 |
17DAP/reference | 0.96774 | 0.51 |
27DAP/reference | 1.16984 | 0.212 |
39DAP/reference | 1.42444 | 0.021 |
41DAP/reference | 0.97507 | 0.422 |
42DAP/reference | 1.20692 | 0.076 |
43DAP/reference | 1.24315 | 0.117 |
47DAP/reference | 1.46253 | 0.01 |
52DAP/reference | 1.12661 | 0.043 |
57DAP/reference | 1.05021 | 0.868 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76008 | 0.029 |
17DAP/reference | 0.87108 | 0.313 |
27DAP/reference | 0.78616 | 0.025 |
39DAP/reference | 0.91806 | 0.033 |
41DAP/reference | 0.97161 | 0.512 |
42DAP/reference | 1.24965 | 0.06 |
43DAP/reference | 1.30573 | 0.084 |
47DAP/reference | 2.12668 | 0.007 |
52DAP/reference | 2.22968 | 0.029 |
57DAP/reference | 3.96406 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19936 | 0.945 |
26DAP/20DAP | 1.30981 | 0.223 |
34DAP/26DAP | 1.09843 | 0.819 |
51DAP/34DAP | 0.95935 | 0.743 |
52DAP/51DAP | 0.77758 | 0.079 |
53DAP/52DAP | 1.13986 | 0.678 |
55DAP/53DAP | 0.94905 | 0.698 |
57DAP/55DAP | 1.22698 | 0.525 |
62DAP/57DAP | 0.88062 | 0.681 |
68DAP/62DAP | 1.04352 | 1 |
68DAP/14DAP | 1.4048 | 0.023 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04265 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.15276 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.771 | 0.446 |
Immature Eggplant/Mature Eggplant | 1.29376 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.70831 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.65014 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.22772 | 0.742 |
1-1-2/M82 | 1.67348 | |
12-2/M82 | 1.14768 | 1 |
12-4/M82 | 1.22254 | 1 |
1-3/M82 | 1.56976 | 0.248 |
2-1-1/M82 | 1.14796 | 0.764 |
2-1/M82 | 0.93504 | 1 |
2-6/M82 | 1.00028 | 1 |
3-2/M82 | 1.16783 | 0.717 |
4-1-1/M82 | 1.2695 | 0.968 |
4-1/M82 | 2.3317 | 0.853 |
4-3-2/M82 | 1.30733 | 0.508 |
4-3/M82 | 1.18569 | 0.268 |
5-3/M82 | 0.96381 | 1 |
6-2/M82 | 0.83511 | 0.497 |
6-3/M82 | 1.02678 | 1 |
7-1/M82 | 1.03069 | 0.87 |
7-2/M82 | 1.07023 | 1 |
9-3-2/M82 | 1.20001 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.16405 | 0.365 |
IL2-6/WTpooled | 0.85566 | 0.348 |
IL7-5/WTpooled | 0.94737 | 1 |
IL7-3/WTpooled | 1.19618 | 1 |
IL12-4/WTpooled | 1.24915 | 0.557 |
IL1-4/WTpooled | 1.11692 | 1 |
WT/WTpooled | 1.01597 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05123 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13731 | 0.75 |
DC3000/delta hrp 6h | 1.01449 | 1 |
DC3000/delta hrp 12h | 0.95468 | 1 |
DC3000/delta hrp 24h | 1.00738 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22142 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.1919 | 0.292 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03214 | 1 |
Exp 36h | 1.31967 | 0.489 |
Exp 60h | 1.38126 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9559 | 1 |
Var 0h | 0.98613 | 1 |
Var 12h I row2-row1 | 1.03285 | 0.654 |
Var 12h NI row2-row1 | 1.0171 | 1 |
Var 36h I row2-row1 | 0.99639 | 1 |
Var 36h NI row2-row1 | 0.99224 | 0.852 |
Var 60h I row2-row1 | 0.91336 | 0.832 |
Var 60h NI row2-row1 | 0.86396 | 0.572 |
Time course 0hI-0hNI | 0.98769 | 0.988 |
Time course 12hI-12hNI | 0.99237 | 1 |
Time course 36hI-36hNI | 1.12268 | 0.07 |
Time course 60hI-60hNI | 1.59944 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93628 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.17877 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.00851 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.21328 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70831 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7053 | 0.172 |
Manapal/WT (break) | 0.82065 | 1 |
Manapal/WT (red) | 1.16002 | 0.164 |
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