Expression of 1-1-3.3.1.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.835710.786
27DAP/17DAP1.259160.872
39DAP/27DAP1.38750.287
41DAP/39DAP1.025760.795
42DAP/41DAP5.333720.712
43DAP/42DAP1.90240.08
47DAP/43DAP1.111620.979
52DAP/47DAP1.245740.983
57DAP/52DAP0.672820.588

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.063570.844
17DAP/reference1.171960.874
27DAP/reference1.535140.026
39DAP/reference1.353390.486
41DAP/reference1.561680.012
42DAP/reference1.465510.068
43DAP/reference1.651180.008
47DAP/reference2.403380.001
52DAP/reference2.340120.102
57DAP/reference1.525520.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.609820.47
27DAP/17DAP0.898120.887
39DAP/27DAP1.658540.285
41DAP/39DAP1.010620.883
42DAP/41DAP0.916910.687
43DAP/42DAP2.290460.585
47DAP/43DAP2.37275
52DAP/47DAP1.180570.856
57DAP/52DAP2.20389
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952830.183
17DAP/reference1.263451
27DAP/reference1.214840.049
39DAP/reference1.426550.016
41DAP/reference1.397880.03
42DAP/reference1.321910.076
43DAP/reference1.532040.011
47DAP/reference1.318580.259
52DAP/reference1.389260.025
57DAP/reference1.308360.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041510.802
17DAP/reference0.881490.102
27DAP/reference1.148950.639
39DAP/reference1.069480.509
41DAP/reference0.760960.115
42DAP/reference1.200610.259
43DAP/reference1.111770.411
47DAP/reference0.950770.559
52DAP/reference1.168990.017
57DAP/referenceN/AN/A

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.540040.23
17DAP/reference1.332270.279
27DAP/reference1.281250.029
39DAP/reference1.2650.022
41DAP/reference1.354590.06
42DAP/reference1.258170.099
43DAP/reference1.426820.012
47DAP/referenceN/AN/A
52DAP/reference1.42896
57DAP/reference1.598390.052

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAPN/AN/A
34DAP/26DAP1.405011
51DAP/34DAP0.46904
52DAP/51DAPN/AN/A
53DAP/52DAP1.053640.921
55DAP/53DAP1.552170.244
57DAP/55DAP1.04897
62DAP/57DAPN/AN/A
68DAP/62DAP1.8542
68DAP/14DAP0.82852

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.50154

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.747130.247
IL2-6/WTpooled0.684250.473
IL7-5/WTpooled1.1336
IL7-3/WTpooled1.056230.362
IL12-4/WTpooled1.072870.737
IL1-4/WTpooled0.992181
WT/WTpooled0.928021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.207330.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.892071
Manapal/WT (red)N/AN/A