Expression of 1-1-3.3.1.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.83571 | 0.786 |
27DAP/17DAP | 1.25916 | 0.872 |
39DAP/27DAP | 1.3875 | 0.287 |
41DAP/39DAP | 1.02576 | 0.795 |
42DAP/41DAP | 5.33372 | 0.712 |
43DAP/42DAP | 1.9024 | 0.08 |
47DAP/43DAP | 1.11162 | 0.979 |
52DAP/47DAP | 1.24574 | 0.983 |
57DAP/52DAP | 0.67282 | 0.588 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06357 | 0.844 |
17DAP/reference | 1.17196 | 0.874 |
27DAP/reference | 1.53514 | 0.026 |
39DAP/reference | 1.35339 | 0.486 |
41DAP/reference | 1.56168 | 0.012 |
42DAP/reference | 1.46551 | 0.068 |
43DAP/reference | 1.65118 | 0.008 |
47DAP/reference | 2.40338 | 0.001 |
52DAP/reference | 2.34012 | 0.102 |
57DAP/reference | 1.52552 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.60982 | 0.47 |
27DAP/17DAP | 0.89812 | 0.887 |
39DAP/27DAP | 1.65854 | 0.285 |
41DAP/39DAP | 1.01062 | 0.883 |
42DAP/41DAP | 0.91691 | 0.687 |
43DAP/42DAP | 2.29046 | 0.585 |
47DAP/43DAP | 2.37275 | |
52DAP/47DAP | 1.18057 | 0.856 |
57DAP/52DAP | 2.20389 | |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95283 | 0.183 |
17DAP/reference | 1.26345 | 1 |
27DAP/reference | 1.21484 | 0.049 |
39DAP/reference | 1.42655 | 0.016 |
41DAP/reference | 1.39788 | 0.03 |
42DAP/reference | 1.32191 | 0.076 |
43DAP/reference | 1.53204 | 0.011 |
47DAP/reference | 1.31858 | 0.259 |
52DAP/reference | 1.38926 | 0.025 |
57DAP/reference | 1.30836 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04151 | 0.802 |
17DAP/reference | 0.88149 | 0.102 |
27DAP/reference | 1.14895 | 0.639 |
39DAP/reference | 1.06948 | 0.509 |
41DAP/reference | 0.76096 | 0.115 |
42DAP/reference | 1.20061 | 0.259 |
43DAP/reference | 1.11177 | 0.411 |
47DAP/reference | 0.95077 | 0.559 |
52DAP/reference | 1.16899 | 0.017 |
57DAP/reference | N/A | N/A |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54004 | 0.23 |
17DAP/reference | 1.33227 | 0.279 |
27DAP/reference | 1.28125 | 0.029 |
39DAP/reference | 1.265 | 0.022 |
41DAP/reference | 1.35459 | 0.06 |
42DAP/reference | 1.25817 | 0.099 |
43DAP/reference | 1.42682 | 0.012 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.42896 | |
57DAP/reference | 1.59839 | 0.052 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | N/A | N/A |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.40501 | 1 |
51DAP/34DAP | 0.46904 | |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.05364 | 0.921 |
55DAP/53DAP | 1.55217 | 0.244 |
57DAP/55DAP | 1.04897 | |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.8542 | |
68DAP/14DAP | 0.82852 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.50154 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.74713 | 0.247 |
IL2-6/WTpooled | 0.68425 | 0.473 |
IL7-5/WTpooled | 1.1336 | |
IL7-3/WTpooled | 1.05623 | 0.362 |
IL12-4/WTpooled | 1.07287 | 0.737 |
IL1-4/WTpooled | 0.99218 | 1 |
WT/WTpooled | 0.92802 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.20733 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.89207 | 1 |
Manapal/WT (red) | N/A | N/A |
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