Expression of 1-1-3.3.10.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95401 | 0.722 |
27DAP/17DAP | 0.86043 | 0.626 |
39DAP/27DAP | 0.92899 | 0.594 |
41DAP/39DAP | 0.91423 | 0.63 |
42DAP/41DAP | 1.04519 | 0.941 |
43DAP/42DAP | 1.07582 | 1 |
47DAP/43DAP | 0.99557 | 0.943 |
52DAP/47DAP | 1.13412 | 0.671 |
57DAP/52DAP | 0.931 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22973 | 0.188 |
17DAP/reference | 1.21231 | 0.143 |
27DAP/reference | 0.95861 | 0.552 |
39DAP/reference | 1.05968 | 0.557 |
41DAP/reference | 1.01008 | 1 |
42DAP/reference | 1.03824 | 0.544 |
43DAP/reference | 0.90926 | 0.123 |
47DAP/reference | 1.04075 | 0.666 |
52DAP/reference | 1.08155 | 0.607 |
57DAP/reference | 1.01153 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26914 | 0.121 |
27DAP/17DAP | 0.8078 | 0.169 |
39DAP/27DAP | 0.69863 | 0.037 |
41DAP/39DAP | 1.05866 | 0.853 |
42DAP/41DAP | 1.01697 | 0.991 |
43DAP/42DAP | 1.13704 | 0.103 |
47DAP/43DAP | 0.98994 | 0.933 |
52DAP/47DAP | 1.03816 | 0.851 |
57DAP/52DAP | 1.1752 | 0.327 |
57DAP/7DAP | 0.7525 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16286 | 0.298 |
17DAP/reference | 1.34273 | 0.008 |
27DAP/reference | 1.30717 | 0.012 |
39DAP/reference | 1.42637 | 0.013 |
41DAP/reference | 1.35252 | 0.045 |
42DAP/reference | 1.43919 | 0.013 |
43DAP/reference | 1.34979 | 0.029 |
47DAP/reference | 1.1478 | 0.915 |
52DAP/reference | 1.32524 | 0.01 |
57DAP/reference | 1.17358 | 0.015 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10027 | 0.495 |
17DAP/reference | 0.9471 | 0.378 |
27DAP/reference | 1.07013 | 0.648 |
39DAP/reference | 0.94309 | 0.348 |
41DAP/reference | 0.99986 | 0.545 |
42DAP/reference | 0.98129 | 0.534 |
43DAP/reference | 0.95567 | 0.45 |
47DAP/reference | 0.82575 | 0.02 |
52DAP/reference | 0.91402 | 0.131 |
57DAP/reference | 0.92991 | 0.338 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41482 | 0.017 |
17DAP/reference | 1.25548 | 0.148 |
27DAP/reference | 3.63935 | 0.096 |
39DAP/reference | 1.2203 | 0.062 |
41DAP/reference | 1.11656 | 0.257 |
42DAP/reference | 1.13665 | 0.272 |
43DAP/reference | 1.25826 | 0.076 |
47DAP/reference | 0.88728 | 0.066 |
52DAP/reference | 1.29926 | 0.205 |
57DAP/reference | 1.14339 | 0.204 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | N/A | N/A |
26DAP/20DAP | 1.29703 | 0.305 |
34DAP/26DAP | 1.04792 | 1 |
51DAP/34DAP | 1.51834 | 0.032 |
52DAP/51DAP | 0.96163 | 1 |
53DAP/52DAP | 0.90942 | 0.649 |
55DAP/53DAP | 0.7016 | 0.021 |
57DAP/55DAP | 0.87569 | 0.499 |
62DAP/57DAP | 1.00848 | 1 |
68DAP/62DAP | 1.11217 | 0.845 |
68DAP/14DAP | 1.29561 | 0.119 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85654 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00576 | 0.692 |
Mature Green Tomato/Ripe Tomato | 1.35035 | 0.019 |
Immature Eggplant/Mature Eggplant | 1.63894 | |
Ripe Pepper/Ripe Tomato | 1.06824 | 1 |
Mature Eggplant/Ripe Tomato | 0.72667 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.39073 | 0.574 |
1-1-2/M82 | 1.0893 | 1 |
12-2/M82 | 0.84615 | |
12-4/M82 | 1.06886 | 1 |
1-3/M82 | 1.19143 | |
2-1-1/M82 | 0.86713 | 0.683 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.12894 | 0.695 |
3-2/M82 | 1.1917 | 0.84 |
4-1-1/M82 | 1.17027 | 0.876 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.13912 | 0.284 |
4-3/M82 | 1.37098 | 1 |
5-3/M82 | 0.94709 | 1 |
6-2/M82 | 1.3487 | |
6-3/M82 | 0.96252 | 1 |
7-1/M82 | 0.85839 | |
7-2/M82 | 1.16134 | 0.282 |
9-3-2/M82 | 1.20259 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05317 | 1 |
IL12-4/WTpooled | 0.98254 | 1 |
IL1-4/WTpooled | 1.19703 | |
WT/WTpooled | 0.92688 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97223 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02515 | 0.894 |
DC3000/delta hrp 6h | 1.01388 | 0.95 |
DC3000/delta hrp 12h | 1.14701 | 1 |
DC3000/delta hrp 24h | 0.67617 | 0.037 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.71925 | 0.034 |
DC3000 delta B/DC3000 delta AB | 0.628 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.974 | 1 |
Exp 36h | 0.72305 | 0.426 |
Exp 60h | 0.67257 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95594 | 1 |
Var 0h | 0.81714 | 0.933 |
Var 12h I row2-row1 | 0.72497 | 0.338 |
Var 12h NI row2-row1 | 0.97585 | 0.906 |
Var 36h I row2-row1 | 0.94301 | 1 |
Var 36h NI row2-row1 | 1.28695 | 1 |
Var 60h I row2-row1 | 1.04554 | 1 |
Var 60h NI row2-row1 | 1.02447 | 1 |
Time course 0hI-0hNI | 0.95081 | 0.679 |
Time course 12hI-12hNI | 1.00372 | 1 |
Time course 36hI-36hNI | 0.8779 | 0.065 |
Time course 60hI-60hNI | 0.19007 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98494 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.79062 | 0.134 |
transgenic ySAMdc/azygous control (red) | 1.02913 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.83226 | 0.054 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.15928 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.54452 | 0.083 |
Manapal/WT (break) | 1.31027 | 0.183 |
Manapal/WT (red) | 1.05532 | 0.222 |
|
|