Expression of 1-1-3.3.10.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.954010.722
27DAP/17DAP0.860430.626
39DAP/27DAP0.928990.594
41DAP/39DAP0.914230.63
42DAP/41DAP1.045190.941
43DAP/42DAP1.075821
47DAP/43DAP0.995570.943
52DAP/47DAP1.134120.671
57DAP/52DAP0.9310.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.229730.188
17DAP/reference1.212310.143
27DAP/reference0.958610.552
39DAP/reference1.059680.557
41DAP/reference1.010081
42DAP/reference1.038240.544
43DAP/reference0.909260.123
47DAP/reference1.040750.666
52DAP/reference1.081550.607
57DAP/reference1.011531

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.269140.121
27DAP/17DAP0.80780.169
39DAP/27DAP0.698630.037
41DAP/39DAP1.058660.853
42DAP/41DAP1.016970.991
43DAP/42DAP1.137040.103
47DAP/43DAP0.989940.933
52DAP/47DAP1.038160.851
57DAP/52DAP1.17520.327
57DAP/7DAP0.75250.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162860.298
17DAP/reference1.342730.008
27DAP/reference1.307170.012
39DAP/reference1.426370.013
41DAP/reference1.352520.045
42DAP/reference1.439190.013
43DAP/reference1.349790.029
47DAP/reference1.14780.915
52DAP/reference1.325240.01
57DAP/reference1.173580.015

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.100270.495
17DAP/reference0.94710.378
27DAP/reference1.070130.648
39DAP/reference0.943090.348
41DAP/reference0.999860.545
42DAP/reference0.981290.534
43DAP/reference0.955670.45
47DAP/reference0.825750.02
52DAP/reference0.914020.131
57DAP/reference0.929910.338

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.414820.017
17DAP/reference1.255480.148
27DAP/reference3.639350.096
39DAP/reference1.22030.062
41DAP/reference1.116560.257
42DAP/reference1.136650.272
43DAP/reference1.258260.076
47DAP/reference0.887280.066
52DAP/reference1.299260.205
57DAP/reference1.143390.204

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAP1.297030.305
34DAP/26DAP1.047921
51DAP/34DAP1.518340.032
52DAP/51DAP0.961631
53DAP/52DAP0.909420.649
55DAP/53DAP0.70160.021
57DAP/55DAP0.875690.499
62DAP/57DAP1.008481
68DAP/62DAP1.112170.845
68DAP/14DAP1.295610.119

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.856540.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.005760.692
Mature Green Tomato/Ripe Tomato1.350350.019
Immature Eggplant/Mature Eggplant1.63894
Ripe Pepper/Ripe Tomato1.068241
Mature Eggplant/Ripe Tomato0.726671

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.390730.574
1-1-2/M821.08931
12-2/M820.84615
12-4/M821.068861
1-3/M821.19143
2-1-1/M820.867130.683
2-1/M82N/AN/A
2-6/M821.128940.695
3-2/M821.19170.84
4-1-1/M821.170270.876
4-1/M82N/AN/A
4-3-2/M821.139120.284
4-3/M821.370981
5-3/M820.947091
6-2/M821.3487
6-3/M820.962521
7-1/M820.85839
7-2/M821.161340.282
9-3-2/M821.202591

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.053171
IL12-4/WTpooled0.982541
IL1-4/WTpooled1.19703
WT/WTpooled0.926881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.972231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.025150.894
DC3000/delta hrp 6h1.013880.95
DC3000/delta hrp 12h1.147011
DC3000/delta hrp 24h0.676170.037

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.719250.034
DC3000 delta B/DC3000 delta AB0.6280.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.9741
Exp 36h0.723050.426
Exp 60h0.672570.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.955941
Var 0h0.817140.933
Var 12h I row2-row10.724970.338
Var 12h NI row2-row10.975850.906
Var 36h I row2-row10.943011
Var 36h NI row2-row11.286951
Var 60h I row2-row11.045541
Var 60h NI row2-row11.024471
Time course 0hI-0hNI0.950810.679
Time course 12hI-12hNI1.003721
Time course 36hI-36hNI0.87790.065
Time course 60hI-60hNI0.190070.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984940.722
transgenic ySAMdc/azygous control (breaker)0.790620.134
transgenic ySAMdc/azygous control (red)1.029130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.832260.054

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.159280.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.544520.083
Manapal/WT (break)1.310270.183
Manapal/WT (red)1.055320.222