Expression of 1-1-3.3.10.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00655 | 0.847 |
27DAP/17DAP | 1.22998 | 0.752 |
39DAP/27DAP | 0.88311 | 0.573 |
41DAP/39DAP | 1.07586 | 0.844 |
42DAP/41DAP | 0.99671 | 1 |
43DAP/42DAP | 1.05139 | 1 |
47DAP/43DAP | 1.40293 | 0.502 |
52DAP/47DAP | 0.77219 | 0.463 |
57DAP/52DAP | 1.21973 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77692 | 0.049 |
17DAP/reference | 0.95754 | 0.419 |
27DAP/reference | 0.86572 | 0.073 |
39DAP/reference | 1.03351 | 0.889 |
41DAP/reference | 0.88251 | 0.085 |
42DAP/reference | 0.82406 | 0.004 |
43DAP/reference | 1.01612 | 0.957 |
47DAP/reference | 0.84636 | 0.021 |
52DAP/reference | 0.90316 | 0.105 |
57DAP/reference | 1.04959 | 0.6 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13194 | 0.473 |
27DAP/17DAP | 0.96017 | 0.854 |
39DAP/27DAP | 0.95734 | 0.703 |
41DAP/39DAP | 1.26473 | 0.799 |
42DAP/41DAP | 1.1529 | 0.241 |
43DAP/42DAP | 1.06576 | 0.446 |
47DAP/43DAP | 0.98067 | 0.919 |
52DAP/47DAP | 0.97527 | 0.902 |
57DAP/52DAP | 0.97418 | 0.782 |
57DAP/7DAP | 1.05932 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80497 | 0.078 |
17DAP/reference | 0.97932 | 0.447 |
27DAP/reference | 1.12259 | 0.035 |
39DAP/reference | 0.81415 | 0.027 |
41DAP/reference | 0.93601 | 0.298 |
42DAP/reference | 0.82008 | 0.035 |
43DAP/reference | 0.9067 | 0.202 |
47DAP/reference | 0.84905 | 0.128 |
52DAP/reference | 0.81598 | 0.09 |
57DAP/reference | 0.8156 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70508 | 0.029 |
17DAP/reference | 0.76852 | 0.019 |
27DAP/reference | 0.87841 | 0.249 |
39DAP/reference | 0.75097 | 0.037 |
41DAP/reference | 0.90933 | 0.284 |
42DAP/reference | 0.90164 | 0.189 |
43DAP/reference | 1.22182 | 0.159 |
47DAP/reference | 1.01875 | 1 |
52DAP/reference | 0.81718 | 0.06 |
57DAP/reference | 0.8831 | 0.169 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8814 | 0.127 |
17DAP/reference | 1.04188 | 0.62 |
27DAP/reference | 1.06913 | 0.487 |
39DAP/reference | 1.04343 | 0.342 |
41DAP/reference | 1.05022 | 0.439 |
42DAP/reference | 0.90337 | 0.22 |
43DAP/reference | 0.90979 | 0.125 |
47DAP/reference | 0.95488 | 0.409 |
52DAP/reference | 1.43447 | 0.517 |
57DAP/reference | 0.89753 | 0.057 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.80814 | 0.355 |
26DAP/20DAP | 0.85291 | 0.512 |
34DAP/26DAP | 1.00679 | 1 |
51DAP/34DAP | 0.74915 | 0.472 |
52DAP/51DAP | 1.10497 | 0.842 |
53DAP/52DAP | 1.00595 | 1 |
55DAP/53DAP | 1.0991 | 0.755 |
57DAP/55DAP | 0.87307 | 0.521 |
62DAP/57DAP | 1.04823 | 1 |
68DAP/62DAP | 0.77722 | 0.378 |
68DAP/14DAP | 1.13794 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.52019 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.03472 | 0.948 |
Immature Eggplant/Mature Eggplant | 0.1526 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.24677 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.00236 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.91875 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.93533 | |
9-3-2/M82 | 1.04222 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.5681 | 0.243 |
IL2-6/WTpooled | 0.90662 | 0.348 |
IL7-5/WTpooled | 0.68275 | 1 |
IL7-3/WTpooled | 0.40964 | 0.298 |
IL12-4/WTpooled | 0.86013 | 1 |
IL1-4/WTpooled | 0.93879 | 0.834 |
WT/WTpooled | 1.01249 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01899 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93127 | 1 |
DC3000/delta hrp 6h | 0.80427 | 0.95 |
DC3000/delta hrp 12h | 0.96486 | 1 |
DC3000/delta hrp 24h | 0.42869 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.32006 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.24356 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80852 | 0.328 |
Exp 36h | 0.6114 | 0.434 |
Exp 60h | 0.37263 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06001 | 1 |
Var 0h | 0.46624 | 0.457 |
Var 12h I row2-row1 | 0.84211 | 0.357 |
Var 12h NI row2-row1 | 0.54333 | 0.33 |
Var 36h I row2-row1 | 0.70651 | 0.805 |
Var 36h NI row2-row1 | 2.21636 | 1 |
Var 60h I row2-row1 | 1.39116 | 0.347 |
Var 60h NI row2-row1 | 1.5149 | 0.691 |
Time course 0hI-0hNI | 0.70217 | 0.044 |
Time course 12hI-12hNI | 1.13631 | 0.194 |
Time course 36hI-36hNI | 1.05361 | 0.453 |
Time course 60hI-60hNI | 0.05834 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.46044 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.09904 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96635 | 0.126 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 4.33832 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.24217 | 0.381 |
Manapal/WT (red) | 0.93994 | 0.728 |
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