Expression of 1-1-3.3.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.006550.847
27DAP/17DAP1.229980.752
39DAP/27DAP0.883110.573
41DAP/39DAP1.075860.844
42DAP/41DAP0.996711
43DAP/42DAP1.051391
47DAP/43DAP1.402930.502
52DAP/47DAP0.772190.463
57DAP/52DAP1.219730.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.776920.049
17DAP/reference0.957540.419
27DAP/reference0.865720.073
39DAP/reference1.033510.889
41DAP/reference0.882510.085
42DAP/reference0.824060.004
43DAP/reference1.016120.957
47DAP/reference0.846360.021
52DAP/reference0.903160.105
57DAP/reference1.049590.6

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.131940.473
27DAP/17DAP0.960170.854
39DAP/27DAP0.957340.703
41DAP/39DAP1.264730.799
42DAP/41DAP1.15290.241
43DAP/42DAP1.065760.446
47DAP/43DAP0.980670.919
52DAP/47DAP0.975270.902
57DAP/52DAP0.974180.782
57DAP/7DAP1.059321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.804970.078
17DAP/reference0.979320.447
27DAP/reference1.122590.035
39DAP/reference0.814150.027
41DAP/reference0.936010.298
42DAP/reference0.820080.035
43DAP/reference0.90670.202
47DAP/reference0.849050.128
52DAP/reference0.815980.09
57DAP/reference0.81560.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.705080.029
17DAP/reference0.768520.019
27DAP/reference0.878410.249
39DAP/reference0.750970.037
41DAP/reference0.909330.284
42DAP/reference0.901640.189
43DAP/reference1.221820.159
47DAP/reference1.018751
52DAP/reference0.817180.06
57DAP/reference0.88310.169

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.88140.127
17DAP/reference1.041880.62
27DAP/reference1.069130.487
39DAP/reference1.043430.342
41DAP/reference1.050220.439
42DAP/reference0.903370.22
43DAP/reference0.909790.125
47DAP/reference0.954880.409
52DAP/reference1.434470.517
57DAP/reference0.897530.057

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.808140.355
26DAP/20DAP0.852910.512
34DAP/26DAP1.006791
51DAP/34DAP0.749150.472
52DAP/51DAP1.104970.842
53DAP/52DAP1.005951
55DAP/53DAP1.09910.755
57DAP/55DAP0.873070.521
62DAP/57DAP1.048231
68DAP/62DAP0.777220.378
68DAP/14DAP1.137940.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.520190.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.034720.948
Immature Eggplant/Mature Eggplant0.1526
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.24677
4-1-1/M82N/AN/A
4-1/M821.00236
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.918751
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.93533
9-3-2/M821.042221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.56810.243
IL2-6/WTpooled0.906620.348
IL7-5/WTpooled0.682751
IL7-3/WTpooled0.409640.298
IL12-4/WTpooled0.860131
IL1-4/WTpooled0.938790.834
WT/WTpooled1.012491

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.018990.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.931271
DC3000/delta hrp 6h0.804270.95
DC3000/delta hrp 12h0.964861
DC3000/delta hrp 24h0.428690.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.320060.023
DC3000 delta B/DC3000 delta AB0.243560.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.808520.328
Exp 36h0.61140.434
Exp 60h0.372630.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.060011
Var 0h0.466240.457
Var 12h I row2-row10.842110.357
Var 12h NI row2-row10.543330.33
Var 36h I row2-row10.706510.805
Var 36h NI row2-row12.216361
Var 60h I row2-row11.391160.347
Var 60h NI row2-row11.51490.691
Time course 0hI-0hNI0.702170.044
Time course 12hI-12hNI1.136310.194
Time course 36hI-36hNI1.053610.453
Time course 60hI-60hNI0.058340.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.460440.248
transgenic ySAMdc/azygous control (red)1.099040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.966350.126

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt4.338320.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.242170.381
Manapal/WT (red)0.939940.728