Expression of 1-1-3.3.11.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.831490.445
27DAP/17DAP1.462880.815
39DAP/27DAP1.853070.305
41DAP/39DAP0.977640.455
42DAP/41DAP0.832130.774
43DAP/42DAP1.547490.714
47DAP/43DAP0.6850.163
52DAP/47DAP1.395610.813
57DAP/52DAP1.092490.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.128190.788
17DAP/reference1.113870.442
27DAP/reference0.947640.525
39DAP/reference0.91320.17
41DAP/reference0.940390.542
42DAP/reference0.957030.233
43DAP/reference0.949140.555
47DAP/reference0.785410.005
52DAP/reference0.853370.073
57DAP/reference1.07640.392

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.511220.105
27DAP/17DAP1.185170.859
39DAP/27DAP2.33157
41DAP/39DAP1.027640.801
42DAP/41DAP1.002820.812
43DAP/42DAP1.579220.147
47DAP/43DAP1.091840.837
52DAP/47DAP0.853470.591
57DAP/52DAP0.976620.818
57DAP/7DAP0.982571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152210.235
17DAP/reference0.785920.021
27DAP/reference1.061620.664
39DAP/reference1.079920.634
41DAP/reference0.812490.047
42DAP/reference1.064461
43DAP/reference1.330160.032
47DAP/reference1.351280.025
52DAP/reference1.367220.055
57DAP/reference1.284910.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.203260.056
17DAP/reference1.330570.061
27DAP/reference1.020030.79
39DAP/reference1.146580.489
41DAP/reference1.033581
42DAP/reference0.90050.189
43DAP/reference0.990420.646
47DAP/reference0.935150.214
52DAP/reference1.281340.279
57DAP/reference0.816660.169

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.206410.039
17DAP/reference0.945450.56
27DAP/reference0.883050.184
39DAP/reference0.775870.011
41DAP/reference0.830540.209
42DAP/reference0.794940.108
43DAP/reference0.960320.398
47DAP/reference0.937830.357
52DAP/reference1.383710.176
57DAP/reference0.840690.129

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.174030.966
26DAP/20DAP0.993231
34DAP/26DAP0.761190.702
51DAP/34DAP0.752470.504
52DAP/51DAP1.458920.246
53DAP/52DAP0.889780.595
55DAP/53DAP0.850220.592
57DAP/55DAP1.230450.935
62DAP/57DAP1.266290.622
68DAP/62DAP0.987010.885
68DAP/14DAP0.905851

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.974140.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.145350.224
Mature Eggplant/Ripe Tomato0.024021

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.79001
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.962831
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.98881
IL12-4/WTpooled1.066291
IL1-4/WTpooled0.981020.562
WT/WTpooled0.991311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.900191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.232940.921
DC3000/delta hrp 6h2.17837
DC3000/delta hrp 12h0.91971
DC3000/delta hrp 24h1.78290.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h2.635520.326
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.911611
Var 0h0.84482
Var 12h I row2-row10.976970.856
Var 12h NI row2-row10.822770.443
Var 36h I row2-row10.991491
Var 36h NI row2-row11.077090.791
Var 60h I row2-row10.862630.952
Var 60h NI row2-row11.856410.904
Time course 0hI-0hNI1.11090.833
Time course 12hI-12hNI1.018310.968
Time course 36hI-36hNI1.194480.453
Time course 60hI-60hNI1.154071

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.88410.283
transgenic ySAMdc/azygous control (breaker)0.253190.132
transgenic ySAMdc/azygous control (red)1.986440.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.898370.034

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.931670.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.682991
Manapal/WT (break)0.747331
Manapal/WT (red)0.360840.187