Expression of 1-1-3.3.11.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83149 | 0.445 |
27DAP/17DAP | 1.46288 | 0.815 |
39DAP/27DAP | 1.85307 | 0.305 |
41DAP/39DAP | 0.97764 | 0.455 |
42DAP/41DAP | 0.83213 | 0.774 |
43DAP/42DAP | 1.54749 | 0.714 |
47DAP/43DAP | 0.685 | 0.163 |
52DAP/47DAP | 1.39561 | 0.813 |
57DAP/52DAP | 1.09249 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12819 | 0.788 |
17DAP/reference | 1.11387 | 0.442 |
27DAP/reference | 0.94764 | 0.525 |
39DAP/reference | 0.9132 | 0.17 |
41DAP/reference | 0.94039 | 0.542 |
42DAP/reference | 0.95703 | 0.233 |
43DAP/reference | 0.94914 | 0.555 |
47DAP/reference | 0.78541 | 0.005 |
52DAP/reference | 0.85337 | 0.073 |
57DAP/reference | 1.0764 | 0.392 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.51122 | 0.105 |
27DAP/17DAP | 1.18517 | 0.859 |
39DAP/27DAP | 2.33157 | |
41DAP/39DAP | 1.02764 | 0.801 |
42DAP/41DAP | 1.00282 | 0.812 |
43DAP/42DAP | 1.57922 | 0.147 |
47DAP/43DAP | 1.09184 | 0.837 |
52DAP/47DAP | 0.85347 | 0.591 |
57DAP/52DAP | 0.97662 | 0.818 |
57DAP/7DAP | 0.98257 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15221 | 0.235 |
17DAP/reference | 0.78592 | 0.021 |
27DAP/reference | 1.06162 | 0.664 |
39DAP/reference | 1.07992 | 0.634 |
41DAP/reference | 0.81249 | 0.047 |
42DAP/reference | 1.06446 | 1 |
43DAP/reference | 1.33016 | 0.032 |
47DAP/reference | 1.35128 | 0.025 |
52DAP/reference | 1.36722 | 0.055 |
57DAP/reference | 1.28491 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20326 | 0.056 |
17DAP/reference | 1.33057 | 0.061 |
27DAP/reference | 1.02003 | 0.79 |
39DAP/reference | 1.14658 | 0.489 |
41DAP/reference | 1.03358 | 1 |
42DAP/reference | 0.9005 | 0.189 |
43DAP/reference | 0.99042 | 0.646 |
47DAP/reference | 0.93515 | 0.214 |
52DAP/reference | 1.28134 | 0.279 |
57DAP/reference | 0.81666 | 0.169 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20641 | 0.039 |
17DAP/reference | 0.94545 | 0.56 |
27DAP/reference | 0.88305 | 0.184 |
39DAP/reference | 0.77587 | 0.011 |
41DAP/reference | 0.83054 | 0.209 |
42DAP/reference | 0.79494 | 0.108 |
43DAP/reference | 0.96032 | 0.398 |
47DAP/reference | 0.93783 | 0.357 |
52DAP/reference | 1.38371 | 0.176 |
57DAP/reference | 0.84069 | 0.129 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17403 | 0.966 |
26DAP/20DAP | 0.99323 | 1 |
34DAP/26DAP | 0.76119 | 0.702 |
51DAP/34DAP | 0.75247 | 0.504 |
52DAP/51DAP | 1.45892 | 0.246 |
53DAP/52DAP | 0.88978 | 0.595 |
55DAP/53DAP | 0.85022 | 0.592 |
57DAP/55DAP | 1.23045 | 0.935 |
62DAP/57DAP | 1.26629 | 0.622 |
68DAP/62DAP | 0.98701 | 0.885 |
68DAP/14DAP | 0.90585 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97414 | 0.635 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.14535 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.02402 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.79001 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.96283 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.9888 | 1 |
IL12-4/WTpooled | 1.06629 | 1 |
IL1-4/WTpooled | 0.98102 | 0.562 |
WT/WTpooled | 0.99131 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90019 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.23294 | 0.921 |
DC3000/delta hrp 6h | 2.17837 | |
DC3000/delta hrp 12h | 0.9197 | 1 |
DC3000/delta hrp 24h | 1.7829 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 2.63552 | 0.326 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.91161 | 1 |
Var 0h | 0.84482 | |
Var 12h I row2-row1 | 0.97697 | 0.856 |
Var 12h NI row2-row1 | 0.82277 | 0.443 |
Var 36h I row2-row1 | 0.99149 | 1 |
Var 36h NI row2-row1 | 1.07709 | 0.791 |
Var 60h I row2-row1 | 0.86263 | 0.952 |
Var 60h NI row2-row1 | 1.85641 | 0.904 |
Time course 0hI-0hNI | 1.1109 | 0.833 |
Time course 12hI-12hNI | 1.01831 | 0.968 |
Time course 36hI-36hNI | 1.19448 | 0.453 |
Time course 60hI-60hNI | 1.15407 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.8841 | 0.283 |
transgenic ySAMdc/azygous control (breaker) | 0.25319 | 0.132 |
transgenic ySAMdc/azygous control (red) | 1.98644 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89837 | 0.034 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93167 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.68299 | 1 |
Manapal/WT (break) | 0.74733 | 1 |
Manapal/WT (red) | 0.36084 | 0.187 |
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