Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.3.12.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.91718	0.596
27DAP/17DAP	1.21377	0.833
39DAP/27DAP	0.9241	0.663
41DAP/39DAP	1.13005	0.914
42DAP/41DAP	0.9726	1
43DAP/42DAP	0.86689	0.829
47DAP/43DAP	0.60956	0.089
52DAP/47DAP	0.87349	0.619
57DAP/52DAP	1.44751	0.977

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.31449
17DAP/reference	1.00031	1
27DAP/reference	0.87711	0.497
39DAP/reference	1.09101	0.581
41DAP/reference	1.60697
42DAP/reference	1.39287	0.287
43DAP/reference	1.3474
47DAP/reference	1.11738	0.773
52DAP/reference	1.01968	0.749
57DAP/reference	1.78363	0.529

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	N/A	N/A
27DAP/17DAP	1.3672	0.798
39DAP/27DAP	0.32703
41DAP/39DAP	1.30003
42DAP/41DAP	0.85291	0.486
43DAP/42DAP	1.32917	0.664
47DAP/43DAP	1.27748	0.93
52DAP/47DAP	0.62332	0.093
57DAP/52DAP	0.38807	0.063
57DAP/7DAP	0.46042

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9668	0.326
17DAP/reference	0.9244	0.22
27DAP/reference	0.99829	0.748
39DAP/reference	0.91902	0.043
41DAP/reference	0.84489	0.032
42DAP/reference	0.82654	0.032
43DAP/reference	0.73516	0.011
47DAP/reference	0.68429	0.079
52DAP/reference	0.68442	0.012
57DAP/reference	0.78829	0.021

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.41284	0.083
17DAP/reference	1.29058	0.022
27DAP/reference	1.31646	0.271
39DAP/reference	0.73425	0.009
41DAP/reference	0.83144	0.133
42DAP/reference	1.18957	0.649
43DAP/reference	1.22687	0.179
47DAP/reference	1.00273	1
52DAP/reference	1.42157	0.046
57DAP/reference	1.28145	0.221

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0888	0.162
17DAP/reference	1.11955	0.39
27DAP/reference	0.93056	0.174
39DAP/reference	0.94723	0.199
41DAP/reference	1.02822	0.984
42DAP/reference	0.98179	0.671
43DAP/reference	0.85041	0.116
47DAP/reference	0.98405	0.61
52DAP/reference	1.06122	0.705
57DAP/reference	0.63988	0.043

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.76489
26DAP/20DAP	0.33932	0.512
34DAP/26DAP	1.53895	0.304
51DAP/34DAP	N/A	N/A
52DAP/51DAP	0.82715
53DAP/52DAP	1.18408	0.858
55DAP/53DAP	1.16017	0.948
57DAP/55DAP	53.9698	0.841
62DAP/57DAP	0.69932
68DAP/62DAP	1.09622
68DAP/14DAP	1.15905

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.55929

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.10876
IL2-6/WTpooled	1.03937	0.788
IL7-5/WTpooled	0.57253
IL7-3/WTpooled	1.08628	1
IL12-4/WTpooled	0.73323	0.554
IL1-4/WTpooled	1.10917	1
WT/WTpooled	0.9297	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	2.24983
DC3000/delta hrp 6h	1.31273
DC3000/delta hrp 12h	0.97532	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.02256	0.594
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.08661	0.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A