Expression of 1-1-3.3.12.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974540.788
27DAP/17DAP1.386170.766
39DAP/27DAP0.978640.733
41DAP/39DAP1.077970.964
42DAP/41DAP1.128120.868
43DAP/42DAP0.903020.694
47DAP/43DAP1.056010.733
52DAP/47DAP1.16270.637
57DAP/52DAP0.862790.456

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.069330.522
17DAP/reference1.007980.787
27DAP/reference1.084050.2
39DAP/reference0.998450.975
41DAP/reference1.026040.714
42DAP/reference1.014480.68
43DAP/reference1.023980.445
47DAP/reference1.013950.84
52DAP/reference1.090540.205
57DAP/reference1.049780.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.017620.923
27DAP/17DAP0.997140.969
39DAP/27DAP1.047610.615
41DAP/39DAP1.023480.868
42DAP/41DAP0.961220.753
43DAP/42DAP0.995020.991
47DAP/43DAP1.094510.853
52DAP/47DAP0.989140.93
57DAP/52DAP1.032460.806
57DAP/7DAP1.067421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.985440.224
17DAP/reference0.960450.094
27DAP/reference0.955890.033
39DAP/reference1.000241
41DAP/reference1.040720.291
42DAP/reference1.034580.132
43DAP/reference1.01510.537
47DAP/reference0.990640.671
52DAP/reference1.010920.832
57DAP/reference1.025040.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944150.386
17DAP/reference1.021010.69
27DAP/reference1.061540.704
39DAP/reference0.992760.603
41DAP/reference1.000110.683
42DAP/reference0.971130.289
43DAP/reference1.06210.407
47DAP/reference0.997180.714
52DAP/reference1.050770.181
57DAP/reference1.053940.177

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950080.035
17DAP/reference0.986070.668
27DAP/reference0.92770.108
39DAP/reference0.99230.591
41DAP/reference1.037180.57
42DAP/reference1.01220.863
43DAP/reference0.989820.639
47DAP/reference0.991920.626
52DAP/reference0.985570.747
57DAP/reference1.018010.814

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95150.981
26DAP/20DAP0.907250.512
34DAP/26DAP0.99361
51DAP/34DAP1.048430.613
52DAP/51DAP1.006890.915
53DAP/52DAP1.042930.697
55DAP/53DAP1.080040.806
57DAP/55DAP1.035741
62DAP/57DAP0.881930.466
68DAP/62DAP0.868790.543
68DAP/14DAP0.770830.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.026991

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.544640.111
Mature Green Tomato/Ripe Tomato1.269950.149
Immature Eggplant/Mature Eggplant1.126761
Ripe Pepper/Ripe Tomato1.185291
Mature Eggplant/Ripe Tomato0.778441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.049741
1-1-2/M821.046281
12-2/M821.057931
12-4/M820.934720.619
1-3/M821.013451
2-1-1/M821.038351
2-1/M82N/AN/A
2-6/M820.9611
3-2/M820.801180.752
4-1-1/M820.94471
4-1/M821.072220.853
4-3-2/M82N/AN/A
4-3/M820.949721
5-3/M821.050651
6-2/M821.00241
6-3/M820.96723
7-1/M82N/AN/A
7-2/M820.966360.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.46010.277
IL2-6/WTpooled0.733390.383
IL7-5/WTpooled0.953061
IL7-3/WTpooled1.374570.362
IL12-4/WTpooled0.910441
IL1-4/WTpooled1.181841
WT/WTpooled0.935591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.890970.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.968581
DC3000/delta hrp 6h1.117341
DC3000/delta hrp 12h0.903761
DC3000/delta hrp 24h1.025570.821

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.939110.293
DC3000 delta B/DC3000 delta AB0.971880.589

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.006971
Exp 36h0.893670.749
Exp 60h0.987940.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99191
Var 0h0.935631
Var 12h I row2-row11.030450.692
Var 12h NI row2-row10.930310.494
Var 36h I row2-row11.128321
Var 36h NI row2-row10.952710.645
Var 60h I row2-row11.032251
Var 60h NI row2-row11.060640.904
Time course 0hI-0hNI1.066450.344
Time course 12hI-12hNI0.983870.886
Time course 36hI-36hNI1.139330.08
Time course 60hI-60hNI0.942910.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.898290.306
transgenic ySAMdc/azygous control (breaker)1.09991
transgenic ySAMdc/azygous control (red)1.154860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007690.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.217420.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.549470.084
Manapal/WT (break)1.622860.126
Manapal/WT (red)1.517550.164