Expression of 1-1-3.3.14.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.103730.878
27DAP/17DAP1.328010.671
39DAP/27DAP1.339710.504
41DAP/39DAP1.111110.833
42DAP/41DAP1.357160.843
43DAP/42DAP0.970040.91
47DAP/43DAP0.996760.835
52DAP/47DAP1.190010.657
57DAP/52DAP1.432580.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.089960.35
17DAP/reference0.984550.777
27DAP/reference1.015031
39DAP/reference0.995230.901
41DAP/reference0.937190.341
42DAP/reference0.836030.035
43DAP/reference0.938940.155
47DAP/reference0.930610.242
52DAP/reference0.883720.195
57DAP/reference1.115930.27

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.882010.323
27DAP/17DAP1.34280.403
39DAP/27DAP0.967770.908
41DAP/39DAP1.114110.827
42DAP/41DAP1.012210.845
43DAP/42DAP1.174310.478
47DAP/43DAP1.663560.744
52DAP/47DAP1.221590.543
57DAP/52DAP1.213310.414
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896850.1
17DAP/reference0.980220.389
27DAP/reference0.991410.614
39DAP/reference1.031791
41DAP/reference0.970950.489
42DAP/reference0.949920.304
43DAP/reference0.956240.368
47DAP/reference1.008131
52DAP/reference0.769840.035
57DAP/reference0.930660.28

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.919460.426
17DAP/reference0.916360.23
27DAP/reference0.882590.195
39DAP/reference0.836770.102
41DAP/reference0.804570.066
42DAP/reference0.667890.012
43DAP/reference0.954650.486
47DAP/reference0.898220.141
52DAP/reference0.982330.537
57DAP/reference0.934550.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.844560.068
17DAP/reference0.864390.136
27DAP/reference0.877830.049
39DAP/reference0.928530.199
41DAP/reference1.000760.826
42DAP/reference0.895540.361
43DAP/reference0.977490.614
47DAP/reference0.856720.168
52DAP/reference0.964690.623
57DAP/reference0.761710.129

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.789110.708
26DAP/20DAP0.914371
34DAP/26DAP0.63068
51DAP/34DAP1.350860.314
52DAP/51DAP1.181350.676
53DAP/52DAP1.082230.845
55DAP/53DAP1.562540.562
57DAP/55DAP0.917250.715
62DAP/57DAP1.11710.935
68DAP/62DAP1.217070.657
68DAP/14DAP0.885141

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.272710.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.703020.287
Mature Green Tomato/Ripe Tomato0.899670.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.768360.233
Mature Eggplant/Ripe Tomato1.157251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.05251
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.90660.175
1-3/M82N/AN/A
2-1-1/M821.03227
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.945311
6-2/M820.96795
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.055150.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.93260.321
IL2-6/WTpooled1.003681
IL7-5/WTpooled1.374520.792
IL7-3/WTpooled0.897380.31
IL12-4/WTpooled1.005991
IL1-4/WTpooled0.977080.834
WT/WTpooled1.003351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.149940.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.809420.868
DC3000/delta hrp 6h1.177350.18
DC3000/delta hrp 12h1.309121
DC3000/delta hrp 24h1.023730.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.000951
Exp 36h1.074751
Exp 60h1.17920.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.032081
Var 0h0.504690.98
Var 12h I row2-row11.085840.283
Var 12h NI row2-row11.158210.649
Var 36h I row2-row10.893211
Var 36h NI row2-row10.852360.706
Var 60h I row2-row10.851970.285
Var 60h NI row2-row10.753190.932
Time course 0hI-0hNI0.968380.863
Time course 12hI-12hNI1.03430.774
Time course 36hI-36hNI1.076060.101
Time course 60hI-60hNI1.166850.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.03190.408
transgenic ySAMdc/azygous control (breaker)0.799840.251
transgenic ySAMdc/azygous control (red)0.920491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.041470.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.817120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.214020.307
Manapal/WT (break)1.257391
Manapal/WT (red)1.058571