Expression of 1-1-3.3.14.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10373 | 0.878 |
27DAP/17DAP | 1.32801 | 0.671 |
39DAP/27DAP | 1.33971 | 0.504 |
41DAP/39DAP | 1.11111 | 0.833 |
42DAP/41DAP | 1.35716 | 0.843 |
43DAP/42DAP | 0.97004 | 0.91 |
47DAP/43DAP | 0.99676 | 0.835 |
52DAP/47DAP | 1.19001 | 0.657 |
57DAP/52DAP | 1.43258 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08996 | 0.35 |
17DAP/reference | 0.98455 | 0.777 |
27DAP/reference | 1.01503 | 1 |
39DAP/reference | 0.99523 | 0.901 |
41DAP/reference | 0.93719 | 0.341 |
42DAP/reference | 0.83603 | 0.035 |
43DAP/reference | 0.93894 | 0.155 |
47DAP/reference | 0.93061 | 0.242 |
52DAP/reference | 0.88372 | 0.195 |
57DAP/reference | 1.11593 | 0.27 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88201 | 0.323 |
27DAP/17DAP | 1.3428 | 0.403 |
39DAP/27DAP | 0.96777 | 0.908 |
41DAP/39DAP | 1.11411 | 0.827 |
42DAP/41DAP | 1.01221 | 0.845 |
43DAP/42DAP | 1.17431 | 0.478 |
47DAP/43DAP | 1.66356 | 0.744 |
52DAP/47DAP | 1.22159 | 0.543 |
57DAP/52DAP | 1.21331 | 0.414 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89685 | 0.1 |
17DAP/reference | 0.98022 | 0.389 |
27DAP/reference | 0.99141 | 0.614 |
39DAP/reference | 1.03179 | 1 |
41DAP/reference | 0.97095 | 0.489 |
42DAP/reference | 0.94992 | 0.304 |
43DAP/reference | 0.95624 | 0.368 |
47DAP/reference | 1.00813 | 1 |
52DAP/reference | 0.76984 | 0.035 |
57DAP/reference | 0.93066 | 0.28 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91946 | 0.426 |
17DAP/reference | 0.91636 | 0.23 |
27DAP/reference | 0.88259 | 0.195 |
39DAP/reference | 0.83677 | 0.102 |
41DAP/reference | 0.80457 | 0.066 |
42DAP/reference | 0.66789 | 0.012 |
43DAP/reference | 0.95465 | 0.486 |
47DAP/reference | 0.89822 | 0.141 |
52DAP/reference | 0.98233 | 0.537 |
57DAP/reference | 0.93455 | 0.361 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84456 | 0.068 |
17DAP/reference | 0.86439 | 0.136 |
27DAP/reference | 0.87783 | 0.049 |
39DAP/reference | 0.92853 | 0.199 |
41DAP/reference | 1.00076 | 0.826 |
42DAP/reference | 0.89554 | 0.361 |
43DAP/reference | 0.97749 | 0.614 |
47DAP/reference | 0.85672 | 0.168 |
52DAP/reference | 0.96469 | 0.623 |
57DAP/reference | 0.76171 | 0.129 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.78911 | 0.708 |
26DAP/20DAP | 0.91437 | 1 |
34DAP/26DAP | 0.63068 | |
51DAP/34DAP | 1.35086 | 0.314 |
52DAP/51DAP | 1.18135 | 0.676 |
53DAP/52DAP | 1.08223 | 0.845 |
55DAP/53DAP | 1.56254 | 0.562 |
57DAP/55DAP | 0.91725 | 0.715 |
62DAP/57DAP | 1.1171 | 0.935 |
68DAP/62DAP | 1.21707 | 0.657 |
68DAP/14DAP | 0.88514 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.27271 | 0.391 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.70302 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.89967 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.76836 | 0.233 |
Mature Eggplant/Ripe Tomato | 1.15725 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05251 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.9066 | 0.175 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.03227 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.94531 | 1 |
6-2/M82 | 0.96795 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.05515 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9326 | 0.321 |
IL2-6/WTpooled | 1.00368 | 1 |
IL7-5/WTpooled | 1.37452 | 0.792 |
IL7-3/WTpooled | 0.89738 | 0.31 |
IL12-4/WTpooled | 1.00599 | 1 |
IL1-4/WTpooled | 0.97708 | 0.834 |
WT/WTpooled | 1.00335 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14994 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.80942 | 0.868 |
DC3000/delta hrp 6h | 1.17735 | 0.18 |
DC3000/delta hrp 12h | 1.30912 | 1 |
DC3000/delta hrp 24h | 1.02373 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00095 | 1 |
Exp 36h | 1.07475 | 1 |
Exp 60h | 1.1792 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03208 | 1 |
Var 0h | 0.50469 | 0.98 |
Var 12h I row2-row1 | 1.08584 | 0.283 |
Var 12h NI row2-row1 | 1.15821 | 0.649 |
Var 36h I row2-row1 | 0.89321 | 1 |
Var 36h NI row2-row1 | 0.85236 | 0.706 |
Var 60h I row2-row1 | 0.85197 | 0.285 |
Var 60h NI row2-row1 | 0.75319 | 0.932 |
Time course 0hI-0hNI | 0.96838 | 0.863 |
Time course 12hI-12hNI | 1.0343 | 0.774 |
Time course 36hI-36hNI | 1.07606 | 0.101 |
Time course 60hI-60hNI | 1.16685 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0319 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.79984 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.92049 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04147 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81712 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.21402 | 0.307 |
Manapal/WT (break) | 1.25739 | 1 |
Manapal/WT (red) | 1.05857 | 1 |
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