Expression of 1-1-3.3.14.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20874 | 0.561 |
27DAP/17DAP | 1.05359 | 1 |
39DAP/27DAP | 1.00445 | 0.84 |
41DAP/39DAP | 1.31839 | 0.303 |
42DAP/41DAP | 1.217 | 0.802 |
43DAP/42DAP | 0.79511 | 0.631 |
47DAP/43DAP | 0.99978 | 0.934 |
52DAP/47DAP | 1.28929 | 0.451 |
57DAP/52DAP | 0.82067 | 0.737 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99624 | 0.727 |
17DAP/reference | 1.04764 | 0.306 |
27DAP/reference | 0.96601 | 0.525 |
39DAP/reference | 0.91229 | 0.292 |
41DAP/reference | 1.08693 | 0.047 |
42DAP/reference | 0.93746 | 0.054 |
43DAP/reference | 1.02086 | 0.73 |
47DAP/reference | 0.89283 | 0.032 |
52DAP/reference | 0.84617 | 0.099 |
57DAP/reference | 0.84011 | 0.04 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93241 | 0.454 |
27DAP/17DAP | 0.95433 | 0.854 |
39DAP/27DAP | 0.99159 | 0.964 |
41DAP/39DAP | 0.9927 | 1 |
42DAP/41DAP | 1.10777 | 0.601 |
43DAP/42DAP | 1.11318 | 0.192 |
47DAP/43DAP | 1.0285 | 0.951 |
52DAP/47DAP | 1.00069 | 0.979 |
57DAP/52DAP | 0.94513 | 0.352 |
57DAP/7DAP | 1.19364 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92165 | 0.122 |
17DAP/reference | 0.90143 | 0.056 |
27DAP/reference | 0.93848 | 0.055 |
39DAP/reference | 0.87303 | 0.011 |
41DAP/reference | 0.83005 | 0.023 |
42DAP/reference | 0.80982 | 0.011 |
43DAP/reference | 0.88123 | 0.061 |
47DAP/reference | 0.88805 | 0.128 |
52DAP/reference | 0.8872 | 0.15 |
57DAP/reference | 0.87411 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23741 | 0.111 |
17DAP/reference | 1.18302 | 0.11 |
27DAP/reference | 0.98237 | 0.501 |
39DAP/reference | 0.94798 | 0.339 |
41DAP/reference | 0.85834 | 0.067 |
42DAP/reference | 0.8909 | 0.098 |
43DAP/reference | 1.15583 | 0.117 |
47DAP/reference | 0.91575 | 0.133 |
52DAP/reference | 1.04831 | 0.596 |
57DAP/reference | 1.23629 | 0.166 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95861 | 0.158 |
17DAP/reference | 1.05642 | 0.503 |
27DAP/reference | 0.92792 | 0.047 |
39DAP/reference | 0.89495 | 0.019 |
41DAP/reference | 0.94165 | 0.148 |
42DAP/reference | 0.89304 | 0.22 |
43DAP/reference | 0.85951 | 0.125 |
47DAP/reference | 0.92408 | 0.161 |
52DAP/reference | 0.85682 | 0.137 |
57DAP/reference | 0.59875 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25612 | 0.021 |
26DAP/20DAP | 1.05922 | 0.77 |
34DAP/26DAP | 1.02015 | 1 |
51DAP/34DAP | 0.84134 | 0.097 |
52DAP/51DAP | 1.05792 | 0.588 |
53DAP/52DAP | 1.00115 | 1 |
55DAP/53DAP | 1.1865 | 0.562 |
57DAP/55DAP | 0.81924 | 0.194 |
62DAP/57DAP | 1.2406 | 0.35 |
68DAP/62DAP | 0.99878 | 0.81 |
68DAP/14DAP | 0.80425 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68966 | 0.048 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.51283 | 0.063 |
Mature Green Tomato/Ripe Tomato | 0.86717 | 0.256 |
Immature Eggplant/Mature Eggplant | 0.95963 | 0.72 |
Ripe Pepper/Ripe Tomato | 0.49476 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.56824 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.82043 | |
1-1-2/M82 | 0.8626 | 0.804 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97909 | 1 |
1-3/M82 | 0.80401 | 0.378 |
2-1-1/M82 | 1.22785 | 0.342 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11867 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.91289 | 1 |
4-3-2/M82 | 0.93513 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.03684 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.54232 | |
7-1/M82 | 0.95436 | |
7-2/M82 | 0.94465 | 0.881 |
9-3-2/M82 | 0.84348 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.35545 | 0.71 |
IL1-4/WTpooled | 1.08418 | 1 |
WT/WTpooled | 0.94537 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93599 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98989 | 1 |
DC3000/delta hrp 6h | 0.92913 | 0.95 |
DC3000/delta hrp 12h | 1.00243 | 1 |
DC3000/delta hrp 24h | 1.10308 | 0.383 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29735 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.10914 | 0.42 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97396 | 1 |
Exp 36h | 1.39961 | 0.326 |
Exp 60h | 1.3666 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98061 | 1 |
Var 0h | 0.47576 | 1 |
Var 12h I row2-row1 | 1.07679 | 0.544 |
Var 12h NI row2-row1 | 0.88958 | 0.713 |
Var 36h I row2-row1 | 1.02936 | 1 |
Var 36h NI row2-row1 | 1.00401 | 1 |
Var 60h I row2-row1 | 1.27483 | 0.562 |
Var 60h NI row2-row1 | 1.03734 | 1 |
Time course 0hI-0hNI | 1.02851 | 0.867 |
Time course 12hI-12hNI | 1.02521 | 0.816 |
Time course 36hI-36hNI | 0.95999 | 0.494 |
Time course 60hI-60hNI | 1.22133 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94599 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 0.86279 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.85576 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98089 | 0.651 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.03139 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80527 | 0.172 |
Manapal/WT (break) | 0.95478 | 1 |
Manapal/WT (red) | 1.01194 | 1 |
|
|