Expression of 1-1-3.3.16.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.118440.997
27DAP/17DAP1.226910.849
39DAP/27DAP1.170060.677
41DAP/39DAP1.081950.914
42DAP/41DAP1.125111
43DAP/42DAP0.919210.834
47DAP/43DAP0.972030.794
52DAP/47DAP1.276650.601
57DAP/52DAP1.036650.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.049220.685
17DAP/reference1.108750.143
27DAP/reference1.053770.487
39DAP/reference0.987760.75
41DAP/reference0.942740.667
42DAP/reference0.965980.242
43DAP/reference0.951260.576
47DAP/reference0.913350.279
52DAP/reference0.878070.079
57DAP/reference0.893850.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.203930.708
27DAP/17DAP1.16230.514
39DAP/27DAP0.877550.482
41DAP/39DAP1.06690.887
42DAP/41DAP1.110220.675
43DAP/42DAP1.039861
47DAP/43DAP1.007181
52DAP/47DAP0.842330.694
57DAP/52DAP0.952170.732
57DAP/7DAP1.342111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101420.435
17DAP/reference0.883670.124
27DAP/reference0.956580.375
39DAP/reference0.865820.043
41DAP/reference1.06260.864
42DAP/reference0.970950.482
43DAP/reference0.937430.368
47DAP/reference1.067210.632
52DAP/reference0.834440.057
57DAP/reference0.944290.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.15940.456
17DAP/reference0.902780.399
27DAP/reference1.099480.81
39DAP/reference0.85030.062
41DAP/reference0.98670.531
42DAP/reference0.827450.017
43DAP/reference1.040370.827
47DAP/reference0.92140.113
52DAP/reference0.955840.302
57DAP/reference1.136980.324

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.911410.169
17DAP/reference1.011481
27DAP/reference0.791540.081
39DAP/reference0.861130.021
41DAP/reference0.966930.459
42DAP/reference0.910960.287
43DAP/reference0.751110.064
47DAP/reference0.957580.348
52DAP/reference1.168450.649
57DAP/reference0.907210.152

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.748230.966
26DAP/20DAP1.446510.115
34DAP/26DAP0.983430.991
51DAP/34DAP1.059390.988
52DAP/51DAP1.25157
53DAP/52DAP1.468230.565
55DAP/53DAP1.095560.981
57DAP/55DAP1.004461
62DAP/57DAP1.22090.833
68DAP/62DAP1.326840.792
68DAP/14DAP0.895381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.357440.184

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.452390.075
Mature Green Tomato/Ripe Tomato0.981980.715
Immature Eggplant/Mature Eggplant1.187590.061
Ripe Pepper/Ripe Tomato1.409180.256
Mature Eggplant/Ripe Tomato1.910890.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.780691
12-2/M82N/AN/A
12-4/M820.854180.319
1-3/M821.85507
2-1-1/M821.14083
2-1/M821.119541
2-6/M821.073590.405
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.27595
4-3/M821.11708
5-3/M820.974331
6-2/M82N/AN/A
6-3/M820.66069
7-1/M82N/AN/A
7-2/M821.07207
9-3-2/M821.043961

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.770520.321
IL2-6/WTpooled0.983371
IL7-5/WTpooled1.155440.792
IL7-3/WTpooled0.877560.31
IL12-4/WTpooled0.955011
IL1-4/WTpooled1.168831
WT/WTpooled1.114331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.076240.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.135910.894
DC3000/delta hrp 6h0.954490.95
DC3000/delta hrp 12h1.12931
DC3000/delta hrp 24h1.12480.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.381280.321

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.955651
Exp 36h0.986461
Exp 60h1.126630.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995811
Var 0h0.780410.291
Var 12h I row2-row11.122860.544
Var 12h NI row2-row11.078530.649
Var 36h I row2-row11.269760.742
Var 36h NI row2-row11.003911
Var 60h I row2-row10.846840.582
Var 60h NI row2-row11.285910.904
Time course 0hI-0hNI1.098610.662
Time course 12hI-12hNI0.981430.882
Time course 36hI-36hNI0.997060.718
Time course 60hI-60hNI1.058110.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.081570.254
transgenic ySAMdc/azygous control (breaker)0.676690.142
transgenic ySAMdc/azygous control (red)0.949431

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.06370.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.713110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.835980.172
Manapal/WT (break)0.983751
Manapal/WT (red)0.705340.184