Expression of 1-1-3.3.16.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11844 | 0.997 |
27DAP/17DAP | 1.22691 | 0.849 |
39DAP/27DAP | 1.17006 | 0.677 |
41DAP/39DAP | 1.08195 | 0.914 |
42DAP/41DAP | 1.12511 | 1 |
43DAP/42DAP | 0.91921 | 0.834 |
47DAP/43DAP | 0.97203 | 0.794 |
52DAP/47DAP | 1.27665 | 0.601 |
57DAP/52DAP | 1.03665 | 0.995 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04922 | 0.685 |
17DAP/reference | 1.10875 | 0.143 |
27DAP/reference | 1.05377 | 0.487 |
39DAP/reference | 0.98776 | 0.75 |
41DAP/reference | 0.94274 | 0.667 |
42DAP/reference | 0.96598 | 0.242 |
43DAP/reference | 0.95126 | 0.576 |
47DAP/reference | 0.91335 | 0.279 |
52DAP/reference | 0.87807 | 0.079 |
57DAP/reference | 0.89385 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20393 | 0.708 |
27DAP/17DAP | 1.1623 | 0.514 |
39DAP/27DAP | 0.87755 | 0.482 |
41DAP/39DAP | 1.0669 | 0.887 |
42DAP/41DAP | 1.11022 | 0.675 |
43DAP/42DAP | 1.03986 | 1 |
47DAP/43DAP | 1.00718 | 1 |
52DAP/47DAP | 0.84233 | 0.694 |
57DAP/52DAP | 0.95217 | 0.732 |
57DAP/7DAP | 1.34211 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10142 | 0.435 |
17DAP/reference | 0.88367 | 0.124 |
27DAP/reference | 0.95658 | 0.375 |
39DAP/reference | 0.86582 | 0.043 |
41DAP/reference | 1.0626 | 0.864 |
42DAP/reference | 0.97095 | 0.482 |
43DAP/reference | 0.93743 | 0.368 |
47DAP/reference | 1.06721 | 0.632 |
52DAP/reference | 0.83444 | 0.057 |
57DAP/reference | 0.94429 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1594 | 0.456 |
17DAP/reference | 0.90278 | 0.399 |
27DAP/reference | 1.09948 | 0.81 |
39DAP/reference | 0.8503 | 0.062 |
41DAP/reference | 0.9867 | 0.531 |
42DAP/reference | 0.82745 | 0.017 |
43DAP/reference | 1.04037 | 0.827 |
47DAP/reference | 0.9214 | 0.113 |
52DAP/reference | 0.95584 | 0.302 |
57DAP/reference | 1.13698 | 0.324 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91141 | 0.169 |
17DAP/reference | 1.01148 | 1 |
27DAP/reference | 0.79154 | 0.081 |
39DAP/reference | 0.86113 | 0.021 |
41DAP/reference | 0.96693 | 0.459 |
42DAP/reference | 0.91096 | 0.287 |
43DAP/reference | 0.75111 | 0.064 |
47DAP/reference | 0.95758 | 0.348 |
52DAP/reference | 1.16845 | 0.649 |
57DAP/reference | 0.90721 | 0.152 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.74823 | 0.966 |
26DAP/20DAP | 1.44651 | 0.115 |
34DAP/26DAP | 0.98343 | 0.991 |
51DAP/34DAP | 1.05939 | 0.988 |
52DAP/51DAP | 1.25157 | |
53DAP/52DAP | 1.46823 | 0.565 |
55DAP/53DAP | 1.09556 | 0.981 |
57DAP/55DAP | 1.00446 | 1 |
62DAP/57DAP | 1.2209 | 0.833 |
68DAP/62DAP | 1.32684 | 0.792 |
68DAP/14DAP | 0.89538 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35744 | 0.184 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.45239 | 0.075 |
Mature Green Tomato/Ripe Tomato | 0.98198 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.18759 | 0.061 |
Ripe Pepper/Ripe Tomato | 1.40918 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.91089 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.78069 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.85418 | 0.319 |
1-3/M82 | 1.85507 | |
2-1-1/M82 | 1.14083 | |
2-1/M82 | 1.11954 | 1 |
2-6/M82 | 1.07359 | 0.405 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.27595 | |
4-3/M82 | 1.11708 | |
5-3/M82 | 0.97433 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.66069 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.07207 | |
9-3-2/M82 | 1.04396 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77052 | 0.321 |
IL2-6/WTpooled | 0.98337 | 1 |
IL7-5/WTpooled | 1.15544 | 0.792 |
IL7-3/WTpooled | 0.87756 | 0.31 |
IL12-4/WTpooled | 0.95501 | 1 |
IL1-4/WTpooled | 1.16883 | 1 |
WT/WTpooled | 1.11433 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07624 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13591 | 0.894 |
DC3000/delta hrp 6h | 0.95449 | 0.95 |
DC3000/delta hrp 12h | 1.1293 | 1 |
DC3000/delta hrp 24h | 1.1248 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.38128 | 0.321 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95565 | 1 |
Exp 36h | 0.98646 | 1 |
Exp 60h | 1.12663 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99581 | 1 |
Var 0h | 0.78041 | 0.291 |
Var 12h I row2-row1 | 1.12286 | 0.544 |
Var 12h NI row2-row1 | 1.07853 | 0.649 |
Var 36h I row2-row1 | 1.26976 | 0.742 |
Var 36h NI row2-row1 | 1.00391 | 1 |
Var 60h I row2-row1 | 0.84684 | 0.582 |
Var 60h NI row2-row1 | 1.28591 | 0.904 |
Time course 0hI-0hNI | 1.09861 | 0.662 |
Time course 12hI-12hNI | 0.98143 | 0.882 |
Time course 36hI-36hNI | 0.99706 | 0.718 |
Time course 60hI-60hNI | 1.05811 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08157 | 0.254 |
transgenic ySAMdc/azygous control (breaker) | 0.67669 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.94943 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0637 | 0.061 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71311 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83598 | 0.172 |
Manapal/WT (break) | 0.98375 | 1 |
Manapal/WT (red) | 0.70534 | 0.184 |
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