Expression of 1-1-3.3.17.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP7.824110.025
27DAP/17DAP3.200580.065
39DAP/27DAP1.589580.32
41DAP/39DAP0.837970.409
42DAP/41DAP0.670080.774
43DAP/42DAP1.323050.894
47DAP/43DAP0.570.072
52DAP/47DAP1.005580.916
57DAP/52DAP0.881070.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.119510.265
17DAP/reference1.489970.037
27DAP/reference1.079830.759
39DAP/reference1.250130.068
41DAP/reference1.498310.054
42DAP/reference1.345070.005
43DAP/reference1.071660.646
47DAP/reference1.099820.391
52DAP/reference1.012330.791
57DAP/reference0.791830.028

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.77320.036
27DAP/17DAP2.520360.042
39DAP/27DAP1.126071
41DAP/39DAP1.019920.822
42DAP/41DAP1.060410.823
43DAP/42DAP1.346570.273
47DAP/43DAP0.777110.138
52DAP/47DAP1.786580.081
57DAP/52DAP0.888220.532
57DAP/7DAP3.763980.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98450.682
17DAP/reference1.097830.297
27DAP/reference1.183580.16
39DAP/reference1.54050.009
41DAP/reference1.566150.009
42DAP/reference1.559810.018
43DAP/reference1.021721
47DAP/reference1.041060.901
52DAP/reference0.613520.01
57DAP/reference0.622440.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043510.915
17DAP/reference1.313730.271
27DAP/reference1.169660.359
39DAP/reference1.120430.412
41DAP/reference0.963810.422
42DAP/reference1.246930.025
43DAP/reference1.277730.288
47DAP/reference1.345820.008
52DAP/reference1.292990.085
57DAP/reference1.566970.066

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850790.249
17DAP/reference1.160170.558
27DAP/reference1.285720.024
39DAP/reference1.443020.01
41DAP/reference1.201120.213
42DAP/reference1.166210.416
43DAP/reference1.192030.16
47DAP/reference1.282870.044
52DAP/reference0.756450.066
57DAP/reference1.043110.947

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.038870.966
26DAP/20DAP1.005881
34DAP/26DAP0.927880.848
51DAP/34DAP0.661710.125
52DAP/51DAP1.300270.387
53DAP/52DAP1.150750.537
55DAP/53DAP1.301230.177
57DAP/55DAP0.746980.173
62DAP/57DAP1.136860.678
68DAP/62DAP1.286630.672
68DAP/14DAP0.924861

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker16.22180.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.580750.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.11769
Mature Eggplant/Ripe Tomato0.621851

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.982210.944
1-1-2/M822.241791
12-2/M821.203451
12-4/M821.679661
1-3/M820.944981
2-1-1/M821.541010.422
2-1/M820.843510.74
2-6/M821.000371
3-2/M822.039880.463
4-1-1/M821.426931
4-1/M821.059351
4-3-2/M821.510990.284
4-3/M821.631820.268
5-3/M820.737951
6-2/M822.867030.222
6-3/M820.896310.982
7-1/M820.138030.408
7-2/M820.44560.553
9-3-2/M821.736470.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.539980.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.998121
IL12-4/WTpooled1.520960.538
IL1-4/WTpooled1.4641
WT/WTpooled1.187780.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.153050.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.972141
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.185251
DC3000/delta hrp 24h1.151110.383

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.39094
DC3000 delta B/DC3000 delta AB0.756710.125

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.971751
Var 0h1.033730.98
Var 12h I row2-row11.025360.506
Var 12h NI row2-row10.912880.627
Var 36h I row2-row10.898850.805
Var 36h NI row2-row10.981150.791
Var 60h I row2-row11.108950.44
Var 60h NI row2-row11.072191
Time course 0hI-0hNI1.182490.603
Time course 12hI-12hNI1.054360.603
Time course 36hI-36hNI0.980620.54
Time course 60hI-60hNI1.088250.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.494440.246
transgenic ySAMdc/azygous control (breaker)1.316061
transgenic ySAMdc/azygous control (red)0.773371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.395540.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.040751
Manapal/WT (red)1.524030.142