Expression of 1-1-3.3.17.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 7.82411 | 0.025 |
27DAP/17DAP | 3.20058 | 0.065 |
39DAP/27DAP | 1.58958 | 0.32 |
41DAP/39DAP | 0.83797 | 0.409 |
42DAP/41DAP | 0.67008 | 0.774 |
43DAP/42DAP | 1.32305 | 0.894 |
47DAP/43DAP | 0.57 | 0.072 |
52DAP/47DAP | 1.00558 | 0.916 |
57DAP/52DAP | 0.88107 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11951 | 0.265 |
17DAP/reference | 1.48997 | 0.037 |
27DAP/reference | 1.07983 | 0.759 |
39DAP/reference | 1.25013 | 0.068 |
41DAP/reference | 1.49831 | 0.054 |
42DAP/reference | 1.34507 | 0.005 |
43DAP/reference | 1.07166 | 0.646 |
47DAP/reference | 1.09982 | 0.391 |
52DAP/reference | 1.01233 | 0.791 |
57DAP/reference | 0.79183 | 0.028 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.7732 | 0.036 |
27DAP/17DAP | 2.52036 | 0.042 |
39DAP/27DAP | 1.12607 | 1 |
41DAP/39DAP | 1.01992 | 0.822 |
42DAP/41DAP | 1.06041 | 0.823 |
43DAP/42DAP | 1.34657 | 0.273 |
47DAP/43DAP | 0.77711 | 0.138 |
52DAP/47DAP | 1.78658 | 0.081 |
57DAP/52DAP | 0.88822 | 0.532 |
57DAP/7DAP | 3.76398 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9845 | 0.682 |
17DAP/reference | 1.09783 | 0.297 |
27DAP/reference | 1.18358 | 0.16 |
39DAP/reference | 1.5405 | 0.009 |
41DAP/reference | 1.56615 | 0.009 |
42DAP/reference | 1.55981 | 0.018 |
43DAP/reference | 1.02172 | 1 |
47DAP/reference | 1.04106 | 0.901 |
52DAP/reference | 0.61352 | 0.01 |
57DAP/reference | 0.62244 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04351 | 0.915 |
17DAP/reference | 1.31373 | 0.271 |
27DAP/reference | 1.16966 | 0.359 |
39DAP/reference | 1.12043 | 0.412 |
41DAP/reference | 0.96381 | 0.422 |
42DAP/reference | 1.24693 | 0.025 |
43DAP/reference | 1.27773 | 0.288 |
47DAP/reference | 1.34582 | 0.008 |
52DAP/reference | 1.29299 | 0.085 |
57DAP/reference | 1.56697 | 0.066 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85079 | 0.249 |
17DAP/reference | 1.16017 | 0.558 |
27DAP/reference | 1.28572 | 0.024 |
39DAP/reference | 1.44302 | 0.01 |
41DAP/reference | 1.20112 | 0.213 |
42DAP/reference | 1.16621 | 0.416 |
43DAP/reference | 1.19203 | 0.16 |
47DAP/reference | 1.28287 | 0.044 |
52DAP/reference | 0.75645 | 0.066 |
57DAP/reference | 1.04311 | 0.947 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03887 | 0.966 |
26DAP/20DAP | 1.00588 | 1 |
34DAP/26DAP | 0.92788 | 0.848 |
51DAP/34DAP | 0.66171 | 0.125 |
52DAP/51DAP | 1.30027 | 0.387 |
53DAP/52DAP | 1.15075 | 0.537 |
55DAP/53DAP | 1.30123 | 0.177 |
57DAP/55DAP | 0.74698 | 0.173 |
62DAP/57DAP | 1.13686 | 0.678 |
68DAP/62DAP | 1.28663 | 0.672 |
68DAP/14DAP | 0.92486 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 16.2218 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.58075 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.11769 | |
Mature Eggplant/Ripe Tomato | 0.62185 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98221 | 0.944 |
1-1-2/M82 | 2.24179 | 1 |
12-2/M82 | 1.20345 | 1 |
12-4/M82 | 1.67966 | 1 |
1-3/M82 | 0.94498 | 1 |
2-1-1/M82 | 1.54101 | 0.422 |
2-1/M82 | 0.84351 | 0.74 |
2-6/M82 | 1.00037 | 1 |
3-2/M82 | 2.03988 | 0.463 |
4-1-1/M82 | 1.42693 | 1 |
4-1/M82 | 1.05935 | 1 |
4-3-2/M82 | 1.51099 | 0.284 |
4-3/M82 | 1.63182 | 0.268 |
5-3/M82 | 0.73795 | 1 |
6-2/M82 | 2.86703 | 0.222 |
6-3/M82 | 0.89631 | 0.982 |
7-1/M82 | 0.13803 | 0.408 |
7-2/M82 | 0.4456 | 0.553 |
9-3-2/M82 | 1.73647 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.53998 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99812 | 1 |
IL12-4/WTpooled | 1.52096 | 0.538 |
IL1-4/WTpooled | 1.464 | 1 |
WT/WTpooled | 1.18778 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15305 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97214 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.18525 | 1 |
DC3000/delta hrp 24h | 1.15111 | 0.383 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.39094 | |
DC3000 delta B/DC3000 delta AB | 0.75671 | 0.125 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97175 | 1 |
Var 0h | 1.03373 | 0.98 |
Var 12h I row2-row1 | 1.02536 | 0.506 |
Var 12h NI row2-row1 | 0.91288 | 0.627 |
Var 36h I row2-row1 | 0.89885 | 0.805 |
Var 36h NI row2-row1 | 0.98115 | 0.791 |
Var 60h I row2-row1 | 1.10895 | 0.44 |
Var 60h NI row2-row1 | 1.07219 | 1 |
Time course 0hI-0hNI | 1.18249 | 0.603 |
Time course 12hI-12hNI | 1.05436 | 0.603 |
Time course 36hI-36hNI | 0.98062 | 0.54 |
Time course 60hI-60hNI | 1.08825 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.49444 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.31606 | 1 |
transgenic ySAMdc/azygous control (red) | 0.77337 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.39554 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.04075 | 1 |
Manapal/WT (red) | 1.52403 | 0.142 |
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