Expression of 1-1-3.3.17.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00164 | 0.876 |
27DAP/17DAP | 1.198 | 0.808 |
39DAP/27DAP | 1.17344 | 0.658 |
41DAP/39DAP | 1.25082 | 0.432 |
42DAP/41DAP | 1.03113 | 1 |
43DAP/42DAP | 0.87923 | 0.827 |
47DAP/43DAP | 0.76964 | 0.334 |
52DAP/47DAP | 1.94588 | 0.23 |
57DAP/52DAP | 0.86842 | 0.852 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97112 | 0.589 |
17DAP/reference | 0.79351 | 0.147 |
27DAP/reference | 1.12185 | 0.599 |
39DAP/reference | 0.91677 | 0.541 |
41DAP/reference | 0.89001 | 0.201 |
42DAP/reference | 0.85039 | 0.009 |
43DAP/reference | 0.98439 | 0.785 |
47DAP/reference | 0.95085 | 0.322 |
52DAP/reference | 1.14275 | 0.524 |
57DAP/reference | 1.31553 | 0.136 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40772 | 0.132 |
27DAP/17DAP | 0.95704 | 0.821 |
39DAP/27DAP | 0.80886 | 0.058 |
41DAP/39DAP | 1.24084 | 0.623 |
42DAP/41DAP | 0.80824 | 0.099 |
43DAP/42DAP | 1.14415 | 0.324 |
47DAP/43DAP | 1.06075 | 0.805 |
52DAP/47DAP | 1.13535 | 0.63 |
57DAP/52DAP | 1.00826 | 0.913 |
57DAP/7DAP | 1.64743 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.778 | 0.05 |
17DAP/reference | 0.73174 | 0.012 |
27DAP/reference | 0.81774 | 0.016 |
39DAP/reference | 0.72799 | 0.011 |
41DAP/reference | 0.96828 | 0.449 |
42DAP/reference | 0.70922 | 0.011 |
43DAP/reference | 0.7106 | 0.023 |
47DAP/reference | 0.9927 | 0.671 |
52DAP/reference | 0.64158 | 0.015 |
57DAP/reference | 0.70809 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.59749 | 0.008 |
17DAP/reference | 0.82691 | 0.143 |
27DAP/reference | 0.76651 | 0.229 |
39DAP/reference | 1.05598 | 0.725 |
41DAP/reference | 1.05466 | 0.683 |
42DAP/reference | 1.05951 | 1 |
43DAP/reference | 1.01132 | 0.692 |
47DAP/reference | 0.83764 | 0.007 |
52DAP/reference | 1.21297 | 0.747 |
57DAP/reference | 1.00206 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86511 | 0.038 |
17DAP/reference | 0.93035 | 0.328 |
27DAP/reference | 0.80074 | 0.076 |
39DAP/reference | 0.7972 | 0.026 |
41DAP/reference | 0.90715 | 0.293 |
42DAP/reference | 0.9175 | 0.361 |
43DAP/reference | 0.84246 | 0.15 |
47DAP/reference | 0.95237 | 0.525 |
52DAP/reference | 0.80264 | 0.242 |
57DAP/reference | 1.04736 | 0.79 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.24607 | 0.966 |
26DAP/20DAP | 0.87338 | 0.317 |
34DAP/26DAP | 1.23496 | 1 |
51DAP/34DAP | 0.91229 | 0.618 |
52DAP/51DAP | 1.17589 | 0.481 |
53DAP/52DAP | 0.95016 | 0.783 |
55DAP/53DAP | 1.20384 | 0.319 |
57DAP/55DAP | 1.24151 | 0.969 |
62DAP/57DAP | 1.38257 | 0.445 |
68DAP/62DAP | 1.30196 | 0.872 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85605 | 0.341 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.99624 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 19.7534 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13232 | 0.877 |
1-1-2/M82 | 0.67814 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.13682 | |
1-3/M82 | 0.86479 | 0.378 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04481 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.50524 | |
4-1/M82 | 1.50911 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.9179 | 0.49 |
6-2/M82 | 0.55148 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.89128 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9662 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.46233 | 0.532 |
IL1-4/WTpooled | 0.86437 | |
WT/WTpooled | 1.17684 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07504 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07871 | 0.846 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.02337 | 1 |
DC3000/delta hrp 24h | 0.93354 | 0.513 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04194 | 1 |
DC3000 delta B/DC3000 delta AB | 0.91068 | 0.456 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02252 | 1 |
Var 0h | 0.30218 | 1 |
Var 12h I row2-row1 | 1.27512 | 0.443 |
Var 12h NI row2-row1 | 0.85073 | 0.627 |
Var 36h I row2-row1 | 0.844 | 0.805 |
Var 36h NI row2-row1 | 1.35825 | 1 |
Var 60h I row2-row1 | 1.08513 | 0.562 |
Var 60h NI row2-row1 | 1.18053 | 0.904 |
Time course 0hI-0hNI | 1.05378 | 0.833 |
Time course 12hI-12hNI | 0.81541 | 0.033 |
Time course 36hI-36hNI | 0.70855 | 0.032 |
Time course 60hI-60hNI | 0.96878 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.74399 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.92988 | 1 |
Manapal/WT (red) | 1.28486 | 0.164 |
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