Expression of 1-1-3.3.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.789210.24
27DAP/17DAP0.978921
39DAP/27DAP0.763360.458
41DAP/39DAP1.120160.56
42DAP/41DAP0.90331
43DAP/42DAP0.834130.77
47DAP/43DAP1.75450.282
52DAP/47DAP1.332340.657
57DAP/52DAP1.070230.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.073371
17DAP/reference1.215860.066
27DAP/reference1.134820.184
39DAP/reference1.250320.27
41DAP/reference1.348150.013
42DAP/reference1.232840.039
43DAP/reference1.120840.646
47DAP/reference1.066590.752
52DAP/reference1.122890.141
57DAP/reference0.928510.34

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.90090.363
27DAP/17DAP1.051971
39DAP/27DAP1.153290.499
41DAP/39DAP1.122311
42DAP/41DAP0.976680.768
43DAP/42DAP1.237250.112
47DAP/43DAP1.09490.906
52DAP/47DAP1.145360.696
57DAP/52DAP1.040061
57DAP/7DAP1.103621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.869170.129
17DAP/reference0.986970.518
27DAP/reference0.939660.2
39DAP/reference0.9570.354
41DAP/reference0.785220.038
42DAP/reference0.890090.111
43DAP/reference0.823210.023
47DAP/reference0.901330.383
52DAP/reference0.761340.012
57DAP/reference0.759910.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.447780.164
17DAP/reference1.54620.008
27DAP/reference1.273090.12
39DAP/reference1.384930.03
41DAP/reference1.101530.269
42DAP/reference1.329890.017
43DAP/reference1.525540.027
47DAP/reference1.31980.033
52DAP/reference1.50790.006
57DAP/reference1.437960.046

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908030.092
17DAP/reference1.262430.191
27DAP/reference0.927960.243
39DAP/reference0.971810.544
41DAP/reference1.04650.621
42DAP/reference1.18360.521
43DAP/reference1.057880.815
47DAP/reference1.010681
52DAP/reference0.876070.31
57DAP/reference1.24680.196

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.915021
26DAP/20DAP1.097780.865
34DAP/26DAP1.122341
51DAP/34DAP1.016260.883
52DAP/51DAPN/AN/A
53DAP/52DAP1.122820.895
55DAP/53DAP1.042110.781
57DAP/55DAP1.056810.955
62DAP/57DAP0.942320.871
68DAP/62DAP0.705930.211
68DAP/14DAP0.481090.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.05881

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.814440.058
Mature Green Tomato/Ripe Tomato1.39831
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.213891
Mature Eggplant/Ripe Tomato3.13430.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.985270.961
1-1-2/M820.92908
12-2/M821.04478
12-4/M821.53461
1-3/M820.962541
2-1-1/M821.119441
2-1/M821.61803
2-6/M821.121240.695
3-2/M82N/AN/A
4-1-1/M821.015431
4-1/M821.02793
4-3-2/M820.97557
4-3/M820.8931
5-3/M820.98781
6-2/M82N/AN/A
6-3/M820.8752
7-1/M82N/AN/A
7-2/M821.182560.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.24618
IL2-6/WTpooled0.586880.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.251061
IL12-4/WTpooled1.020131
IL1-4/WTpooled0.782330.402
WT/WTpooled1.03881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.223731

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.926621
DC3000/delta hrp 6h0.989120.95
DC3000/delta hrp 12h1.009511
DC3000/delta hrp 24h0.960740.736

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.991
Exp 36h0.960510.879
Exp 60h0.929720.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983521
Var 0h0.690070.936
Var 12h I row2-row11.038890.736
Var 12h NI row2-row10.840160.546
Var 36h I row2-row11.016641
Var 36h NI row2-row10.789330.706
Var 60h I row2-row11.057410.543
Var 60h NI row2-row11.044221
Time course 0hI-0hNI0.985950.999
Time course 12hI-12hNI1.297960.01
Time course 36hI-36hNI1.345220.013
Time course 60hI-60hNI1.742740.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.014920.921
transgenic ySAMdc/azygous control (breaker)0.710380.173
transgenic ySAMdc/azygous control (red)0.982831

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.920650.09

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.712740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.47090.105
Manapal/WT (break)1.058121
Manapal/WT (red)0.893410.274