Expression of 1-1-3.3.18.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.078520.975
27DAP/17DAP1.25490.832
39DAP/27DAP0.711010.449
41DAP/39DAP1.449990.649
42DAP/41DAP1.309270.913
43DAP/42DAP1.172251
47DAP/43DAP1.090960.868
52DAP/47DAP1.152790.898
57DAP/52DAP1.094921

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.976650.513
17DAP/reference0.908620.079
27DAP/reference0.988880.741
39DAP/reference0.903660.174
41DAP/reference0.898330.114
42DAP/reference0.972480.169
43DAP/reference0.940270.346
47DAP/reference0.98570.503
52DAP/reference1.01261
57DAP/reference1.05340.496

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.765860.151
27DAP/17DAP1.310560.74
39DAP/27DAP1.223750.505
41DAP/39DAP1.069991
42DAP/41DAP1.171481
43DAP/42DAP1.912060.038
47DAP/43DAP0.912690.677
52DAP/47DAP1.018730.925
57DAP/52DAP0.994920.833
57DAP/7DAP0.54804

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.22490.185
17DAP/reference1.370370.008
27DAP/reference1.598210.006
39DAP/reference1.607280.006
41DAP/reference1.703310.041
42DAP/reference2.018770.012
43DAP/reference1.677970.022
47DAP/reference1.155090.298
52DAP/reference1.420550.212
57DAP/reference1.628610.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066250.456
17DAP/reference0.889850.059
27DAP/reference0.824410.045
39DAP/reference1.023121
41DAP/reference0.974280.384
42DAP/reference0.995260.655
43DAP/reference1.004190.774
47DAP/reference0.961280.188
52DAP/reference0.952710.22
57DAP/reference0.909340.073

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016860.804
17DAP/reference1.104890.551
27DAP/reference1.73460.019
39DAP/reference1.46940.027
41DAP/reference1.490040.009
42DAP/reference1.273210.251
43DAP/reference1.254580.25
47DAP/reference1.014650.934
52DAP/reference1.463450.057
57DAP/reference1.09260.694

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.061650.966
26DAP/20DAP1.090660.707
34DAP/26DAP1.212991
51DAP/34DAP1.776010.271
52DAP/51DAP1.242040.776
53DAP/52DAP0.875190.587
55DAP/53DAP0.987080.852
57DAP/55DAP0.833790.433
62DAP/57DAP0.92450.871
68DAP/62DAP1.092130.95
68DAP/14DAP1.000691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.849980.422

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.138130.075
Mature Green Tomato/Ripe Tomato1.18140.363
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.940961
Mature Eggplant/Ripe Tomato1.318691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.985870.961
1-1-2/M821.000821
12-2/M821.288841
12-4/M821.030431
1-3/M820.743770.378
2-1-1/M821.237360.439
2-1/M82N/AN/A
2-6/M821.245760.594
3-2/M820.895541
4-1-1/M820.968451
4-1/M820.892620.737
4-3-2/M820.903951
4-3/M820.869531
5-3/M820.992451
6-2/M820.866950.497
6-3/M820.977281
7-1/M820.921110.443
7-2/M821.038751
9-3-2/M820.848150.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.012181
IL2-6/WTpooled1.022971
IL7-5/WTpooled0.84541
IL7-3/WTpooled1.386020.362
IL12-4/WTpooled1.265980.646
IL1-4/WTpooled1.194441
WT/WTpooled1.020921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013590.921
DC3000/delta hrp 6h0.730220.706
DC3000/delta hrp 12h1.237161
DC3000/delta hrp 24h1.030960.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.873450.265
Exp 36h0.913110.82
Exp 60h0.87880.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974341
Var 0h0.963321
Var 12h I row2-row11.278250.406
Var 12h NI row2-row11.010221
Var 36h I row2-row11.225390.601
Var 36h NI row2-row11.182770.253
Var 60h I row2-row10.816890.582
Var 60h NI row2-row12.207450.904
Time course 0hI-0hNI1.027110.867
Time course 12hI-12hNI0.850610.079
Time course 36hI-36hNI1.191880.722
Time course 60hI-60hNI0.739270.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.469390.287
transgenic ySAMdc/azygous control (breaker)1.330430.248
transgenic ySAMdc/azygous control (red)1.66810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.045540.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.506090.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.096211
Manapal/WT (break)1.456440.126
Manapal/WT (red)1.655180.222