Expression of 1-1-3.3.18.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07852 | 0.975 |
27DAP/17DAP | 1.2549 | 0.832 |
39DAP/27DAP | 0.71101 | 0.449 |
41DAP/39DAP | 1.44999 | 0.649 |
42DAP/41DAP | 1.30927 | 0.913 |
43DAP/42DAP | 1.17225 | 1 |
47DAP/43DAP | 1.09096 | 0.868 |
52DAP/47DAP | 1.15279 | 0.898 |
57DAP/52DAP | 1.09492 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97665 | 0.513 |
17DAP/reference | 0.90862 | 0.079 |
27DAP/reference | 0.98888 | 0.741 |
39DAP/reference | 0.90366 | 0.174 |
41DAP/reference | 0.89833 | 0.114 |
42DAP/reference | 0.97248 | 0.169 |
43DAP/reference | 0.94027 | 0.346 |
47DAP/reference | 0.9857 | 0.503 |
52DAP/reference | 1.0126 | 1 |
57DAP/reference | 1.0534 | 0.496 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.76586 | 0.151 |
27DAP/17DAP | 1.31056 | 0.74 |
39DAP/27DAP | 1.22375 | 0.505 |
41DAP/39DAP | 1.06999 | 1 |
42DAP/41DAP | 1.17148 | 1 |
43DAP/42DAP | 1.91206 | 0.038 |
47DAP/43DAP | 0.91269 | 0.677 |
52DAP/47DAP | 1.01873 | 0.925 |
57DAP/52DAP | 0.99492 | 0.833 |
57DAP/7DAP | 0.54804 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2249 | 0.185 |
17DAP/reference | 1.37037 | 0.008 |
27DAP/reference | 1.59821 | 0.006 |
39DAP/reference | 1.60728 | 0.006 |
41DAP/reference | 1.70331 | 0.041 |
42DAP/reference | 2.01877 | 0.012 |
43DAP/reference | 1.67797 | 0.022 |
47DAP/reference | 1.15509 | 0.298 |
52DAP/reference | 1.42055 | 0.212 |
57DAP/reference | 1.62861 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06625 | 0.456 |
17DAP/reference | 0.88985 | 0.059 |
27DAP/reference | 0.82441 | 0.045 |
39DAP/reference | 1.02312 | 1 |
41DAP/reference | 0.97428 | 0.384 |
42DAP/reference | 0.99526 | 0.655 |
43DAP/reference | 1.00419 | 0.774 |
47DAP/reference | 0.96128 | 0.188 |
52DAP/reference | 0.95271 | 0.22 |
57DAP/reference | 0.90934 | 0.073 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01686 | 0.804 |
17DAP/reference | 1.10489 | 0.551 |
27DAP/reference | 1.7346 | 0.019 |
39DAP/reference | 1.4694 | 0.027 |
41DAP/reference | 1.49004 | 0.009 |
42DAP/reference | 1.27321 | 0.251 |
43DAP/reference | 1.25458 | 0.25 |
47DAP/reference | 1.01465 | 0.934 |
52DAP/reference | 1.46345 | 0.057 |
57DAP/reference | 1.0926 | 0.694 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06165 | 0.966 |
26DAP/20DAP | 1.09066 | 0.707 |
34DAP/26DAP | 1.21299 | 1 |
51DAP/34DAP | 1.77601 | 0.271 |
52DAP/51DAP | 1.24204 | 0.776 |
53DAP/52DAP | 0.87519 | 0.587 |
55DAP/53DAP | 0.98708 | 0.852 |
57DAP/55DAP | 0.83379 | 0.433 |
62DAP/57DAP | 0.9245 | 0.871 |
68DAP/62DAP | 1.09213 | 0.95 |
68DAP/14DAP | 1.00069 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84998 | 0.422 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.13813 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.1814 | 0.363 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.94096 | 1 |
Mature Eggplant/Ripe Tomato | 1.31869 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98587 | 0.961 |
1-1-2/M82 | 1.00082 | 1 |
12-2/M82 | 1.28884 | 1 |
12-4/M82 | 1.03043 | 1 |
1-3/M82 | 0.74377 | 0.378 |
2-1-1/M82 | 1.23736 | 0.439 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.24576 | 0.594 |
3-2/M82 | 0.89554 | 1 |
4-1-1/M82 | 0.96845 | 1 |
4-1/M82 | 0.89262 | 0.737 |
4-3-2/M82 | 0.90395 | 1 |
4-3/M82 | 0.86953 | 1 |
5-3/M82 | 0.99245 | 1 |
6-2/M82 | 0.86695 | 0.497 |
6-3/M82 | 0.97728 | 1 |
7-1/M82 | 0.92111 | 0.443 |
7-2/M82 | 1.03875 | 1 |
9-3-2/M82 | 0.84815 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01218 | 1 |
IL2-6/WTpooled | 1.02297 | 1 |
IL7-5/WTpooled | 0.8454 | 1 |
IL7-3/WTpooled | 1.38602 | 0.362 |
IL12-4/WTpooled | 1.26598 | 0.646 |
IL1-4/WTpooled | 1.19444 | 1 |
WT/WTpooled | 1.02092 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01359 | 0.921 |
DC3000/delta hrp 6h | 0.73022 | 0.706 |
DC3000/delta hrp 12h | 1.23716 | 1 |
DC3000/delta hrp 24h | 1.03096 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87345 | 0.265 |
Exp 36h | 0.91311 | 0.82 |
Exp 60h | 0.8788 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97434 | 1 |
Var 0h | 0.96332 | 1 |
Var 12h I row2-row1 | 1.27825 | 0.406 |
Var 12h NI row2-row1 | 1.01022 | 1 |
Var 36h I row2-row1 | 1.22539 | 0.601 |
Var 36h NI row2-row1 | 1.18277 | 0.253 |
Var 60h I row2-row1 | 0.81689 | 0.582 |
Var 60h NI row2-row1 | 2.20745 | 0.904 |
Time course 0hI-0hNI | 1.02711 | 0.867 |
Time course 12hI-12hNI | 0.85061 | 0.079 |
Time course 36hI-36hNI | 1.19188 | 0.722 |
Time course 60hI-60hNI | 0.73927 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.46939 | 0.287 |
transgenic ySAMdc/azygous control (breaker) | 1.33043 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.6681 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04554 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.50609 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09621 | 1 |
Manapal/WT (break) | 1.45644 | 0.126 |
Manapal/WT (red) | 1.65518 | 0.222 |
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