Expression of 1-1-3.3.18.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07999 | 0.812 |
27DAP/17DAP | 1.22877 | 0.92 |
39DAP/27DAP | 1.48881 | 0.35 |
41DAP/39DAP | 0.87641 | 0.566 |
42DAP/41DAP | 1.46369 | 0.752 |
43DAP/42DAP | 1.79044 | 0.682 |
47DAP/43DAP | 1.10184 | 0.889 |
52DAP/47DAP | 1.02095 | 0.781 |
57DAP/52DAP | 1.45195 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00068 | 0.806 |
17DAP/reference | 1.12152 | 0.047 |
27DAP/reference | 1.01261 | 0.934 |
39DAP/reference | 1.01942 | 0.771 |
41DAP/reference | 1.0484 | 0.338 |
42DAP/reference | 0.94493 | 0.163 |
43DAP/reference | 1.021 | 0.838 |
47DAP/reference | 0.98953 | 0.535 |
52DAP/reference | 0.77579 | 0.027 |
57DAP/reference | 0.82227 | 0.059 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00788 | 1 |
27DAP/17DAP | 0.93742 | 0.58 |
39DAP/27DAP | 1.06065 | 0.548 |
41DAP/39DAP | 1.0355 | 0.876 |
42DAP/41DAP | 0.96833 | 0.726 |
43DAP/42DAP | 1.0236 | 0.513 |
47DAP/43DAP | 0.9943 | 0.989 |
52DAP/47DAP | 0.99594 | 0.962 |
57DAP/52DAP | 1.023 | 0.963 |
57DAP/7DAP | 1.09623 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87862 | 0.1 |
17DAP/reference | 0.9191 | 0.021 |
27DAP/reference | 0.8394 | 0.01 |
39DAP/reference | 0.95261 | 0.064 |
41DAP/reference | 0.904 | 0.018 |
42DAP/reference | 0.89809 | 0.02 |
43DAP/reference | 0.89011 | 0.012 |
47DAP/reference | 0.87518 | 0.04 |
52DAP/reference | 0.85205 | 0.022 |
57DAP/reference | 0.88783 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08664 | 0.38 |
17DAP/reference | 1.03407 | 0.806 |
27DAP/reference | 0.87122 | 0.155 |
39DAP/reference | 0.90479 | 0.095 |
41DAP/reference | 0.84323 | 0.04 |
42DAP/reference | 0.82889 | 0.017 |
43DAP/reference | 1.00972 | 1 |
47DAP/reference | 0.8804 | 0.021 |
52DAP/reference | 0.97437 | 0.407 |
57DAP/reference | 1.15752 | 0.101 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96189 | 0.068 |
17DAP/reference | 0.96033 | 0.499 |
27DAP/reference | 0.8731 | 0.03 |
39DAP/reference | 0.88853 | 0.016 |
41DAP/reference | 0.91255 | 0.055 |
42DAP/reference | 0.7687 | 0.049 |
43DAP/reference | 0.84398 | 0.095 |
47DAP/reference | 0.96463 | 0.452 |
52DAP/reference | 0.8243 | 0.082 |
57DAP/reference | 0.54312 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06995 | 0.966 |
26DAP/20DAP | 0.9274 | 0.512 |
34DAP/26DAP | 1.01847 | 1 |
51DAP/34DAP | 1.05154 | 0.613 |
52DAP/51DAP | 0.99474 | 1 |
53DAP/52DAP | 0.99038 | 0.938 |
55DAP/53DAP | 0.94686 | 0.686 |
57DAP/55DAP | 1.008 | 0.925 |
62DAP/57DAP | 0.71782 | 0.05 |
68DAP/62DAP | 0.89905 | 0.579 |
68DAP/14DAP | 0.96202 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.80766 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.10005 | 0.046 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.61007 | 0.092 |
Ripe Pepper/Ripe Tomato | 5.61403 | 1 |
Mature Eggplant/Ripe Tomato | 1.3293 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03892 | 1 |
1-1-2/M82 | 0.83906 | |
12-2/M82 | 1.31673 | 1 |
12-4/M82 | 0.98561 | 1 |
1-3/M82 | 0.81868 | 0.378 |
2-1-1/M82 | 1.24201 | 0.764 |
2-1/M82 | 1.27861 | 1 |
2-6/M82 | 1.27902 | 0.505 |
3-2/M82 | 0.76924 | |
4-1-1/M82 | 1.26611 | 0.782 |
4-1/M82 | 1.09598 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.88426 | 1 |
5-3/M82 | 0.95438 | 1 |
6-2/M82 | 0.94036 | 1 |
6-3/M82 | 1.06275 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.23836 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.82353 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.79584 | 1 |
IL7-3/WTpooled | 0.83187 | |
IL12-4/WTpooled | 1.35158 | 0.525 |
IL1-4/WTpooled | 1.02153 | 1 |
WT/WTpooled | 1.15303 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97158 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95815 | 1 |
DC3000/delta hrp 6h | 1.01518 | 1 |
DC3000/delta hrp 12h | 1.2175 | 1 |
DC3000/delta hrp 24h | 1.04451 | 0.655 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03371 | 0.648 |
DC3000 delta B/DC3000 delta AB | 1.0133 | 0.738 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9902 | 1 |
Exp 36h | 0.77342 | 0.456 |
Exp 60h | 1.03759 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99802 | 1 |
Var 0h | 0.52125 | 1 |
Var 12h I row2-row1 | 1.09512 | 0.272 |
Var 12h NI row2-row1 | 0.91751 | 0.546 |
Var 36h I row2-row1 | 1.16075 | 1 |
Var 36h NI row2-row1 | 0.94017 | 0.522 |
Var 60h I row2-row1 | 1.2335 | 0.562 |
Var 60h NI row2-row1 | 1.19675 | 0.904 |
Time course 0hI-0hNI | 1.14732 | 0.63 |
Time course 12hI-12hNI | 1.00719 | 0.9 |
Time course 36hI-36hNI | 1.05728 | 0.355 |
Time course 60hI-60hNI | 1.15983 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07506 | 0.283 |
transgenic ySAMdc/azygous control (breaker) | 0.89123 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.98547 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10524 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99284 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.68637 | 0.172 |
Manapal/WT (break) | 0.85001 | 1 |
Manapal/WT (red) | 1.11992 | 1 |
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