Expression of 1-1-3.3.18.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84147 | 0.436 |
27DAP/17DAP | 1.54979 | 0.546 |
39DAP/27DAP | 1.15944 | 0.732 |
41DAP/39DAP | 1.10185 | 0.85 |
42DAP/41DAP | 1.53189 | 0.654 |
43DAP/42DAP | 0.9713 | 0.912 |
47DAP/43DAP | 1.29319 | 0.49 |
52DAP/47DAP | 0.91742 | 0.799 |
57DAP/52DAP | 0.99781 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85453 | 0.067 |
17DAP/reference | 0.85899 | 0.158 |
27DAP/reference | 0.91986 | 0.201 |
39DAP/reference | 0.98323 | 0.75 |
41DAP/reference | 0.96302 | 0.542 |
42DAP/reference | 1.16848 | 0.022 |
43DAP/reference | 2.0762 | 0.007 |
47DAP/reference | 1.42847 | 0.018 |
52DAP/reference | 1.03096 | 1 |
57DAP/reference | 1.30357 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01041 | 0.871 |
27DAP/17DAP | 1.07492 | 0.817 |
39DAP/27DAP | 0.85433 | 0.269 |
41DAP/39DAP | 0.91483 | 0.599 |
42DAP/41DAP | 1.03735 | 1 |
43DAP/42DAP | 1.08374 | 0.324 |
47DAP/43DAP | 1.03922 | 0.865 |
52DAP/47DAP | 0.97706 | 0.902 |
57DAP/52DAP | 1.01319 | 0.984 |
57DAP/7DAP | 1.02668 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20786 | 0.132 |
17DAP/reference | 1.08306 | 0.244 |
27DAP/reference | 0.96936 | 0.43 |
39DAP/reference | 0.93633 | 0.307 |
41DAP/reference | 0.86874 | 0.07 |
42DAP/reference | 1.02421 | 1 |
43DAP/reference | 0.95234 | 0.305 |
47DAP/reference | 1.06634 | 0.901 |
52DAP/reference | 0.83808 | 0.038 |
57DAP/reference | 0.91297 | 0.114 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99534 | 0.907 |
17DAP/reference | 0.89415 | 0.032 |
27DAP/reference | 0.75311 | 0.014 |
39DAP/reference | 0.92088 | 0.152 |
41DAP/reference | 0.87317 | 0.13 |
42DAP/reference | 1.01993 | 1 |
43DAP/reference | 1.11898 | 0.532 |
47DAP/reference | 1.25026 | 0.074 |
52DAP/reference | 0.89371 | 0.121 |
57DAP/reference | 1.01702 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12286 | 0.119 |
17DAP/reference | 1.06952 | 0.563 |
27DAP/reference | 0.96409 | 0.516 |
39DAP/reference | 0.95543 | 0.43 |
41DAP/reference | 0.98608 | 0.682 |
42DAP/reference | 1.2062 | 0.459 |
43DAP/reference | 1.13515 | 0.362 |
47DAP/reference | 1.86539 | 0.006 |
52DAP/reference | 1.1707 | 0.89 |
57DAP/reference | 1.02522 | 0.878 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96803 | 1 |
26DAP/20DAP | 0.85409 | 0.146 |
34DAP/26DAP | 0.96632 | 0.94 |
51DAP/34DAP | 0.8137 | 0.22 |
52DAP/51DAP | 1.15693 | 0.467 |
53DAP/52DAP | 1.01627 | 0.944 |
55DAP/53DAP | 1.08794 | 0.848 |
57DAP/55DAP | 1.15897 | 0.643 |
62DAP/57DAP | 1.06267 | 0.833 |
68DAP/62DAP | 0.98578 | 0.885 |
68DAP/14DAP | 1.18176 | 0.2 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99482 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.38286 | 1 |
Mature Green Tomato/Ripe Tomato | 1.20569 | 0.948 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.29629 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.05821 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.3604 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.1156 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.27654 | 0.426 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03439 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11268 | |
DC3000/delta hrp 6h | 1.07158 | 1 |
DC3000/delta hrp 12h | 0.98444 | 1 |
DC3000/delta hrp 24h | 0.8055 | 0.285 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09336 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.0029 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71416 | 1 |
Exp 36h | 0.72497 | 0.456 |
Exp 60h | 0.75637 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99907 | 1 |
Var 0h | 1.17433 | 0.782 |
Var 12h I row2-row1 | 0.9083 | 0.418 |
Var 12h NI row2-row1 | 0.94449 | 0.82 |
Var 36h I row2-row1 | 1.03007 | 1 |
Var 36h NI row2-row1 | 1.97653 | 1 |
Var 60h I row2-row1 | 0.98499 | 0.952 |
Var 60h NI row2-row1 | 0.94767 | 0.866 |
Time course 0hI-0hNI | 1.02554 | 0.852 |
Time course 12hI-12hNI | 1.04498 | 0.684 |
Time course 36hI-36hNI | 0.94039 | 0.306 |
Time course 60hI-60hNI | 0.98713 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95187 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 1.28967 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04107 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99296 | 0.588 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.25616 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.72697 | 0.088 |
Manapal/WT (break) | 2.05312 | 0.14 |
Manapal/WT (red) | 0.8214 | 0.503 |
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