Expression of 1-1-3.3.18.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.841470.436
27DAP/17DAP1.549790.546
39DAP/27DAP1.159440.732
41DAP/39DAP1.101850.85
42DAP/41DAP1.531890.654
43DAP/42DAP0.97130.912
47DAP/43DAP1.293190.49
52DAP/47DAP0.917420.799
57DAP/52DAP0.997810.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.854530.067
17DAP/reference0.858990.158
27DAP/reference0.919860.201
39DAP/reference0.983230.75
41DAP/reference0.963020.542
42DAP/reference1.168480.022
43DAP/reference2.07620.007
47DAP/reference1.428470.018
52DAP/reference1.030961
57DAP/reference1.303570.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.010410.871
27DAP/17DAP1.074920.817
39DAP/27DAP0.854330.269
41DAP/39DAP0.914830.599
42DAP/41DAP1.037351
43DAP/42DAP1.083740.324
47DAP/43DAP1.039220.865
52DAP/47DAP0.977060.902
57DAP/52DAP1.013190.984
57DAP/7DAP1.026681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.207860.132
17DAP/reference1.083060.244
27DAP/reference0.969360.43
39DAP/reference0.936330.307
41DAP/reference0.868740.07
42DAP/reference1.024211
43DAP/reference0.952340.305
47DAP/reference1.066340.901
52DAP/reference0.838080.038
57DAP/reference0.912970.114

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995340.907
17DAP/reference0.894150.032
27DAP/reference0.753110.014
39DAP/reference0.920880.152
41DAP/reference0.873170.13
42DAP/reference1.019931
43DAP/reference1.118980.532
47DAP/reference1.250260.074
52DAP/reference0.893710.121
57DAP/reference1.017021

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122860.119
17DAP/reference1.069520.563
27DAP/reference0.964090.516
39DAP/reference0.955430.43
41DAP/reference0.986080.682
42DAP/reference1.20620.459
43DAP/reference1.135150.362
47DAP/reference1.865390.006
52DAP/reference1.17070.89
57DAP/reference1.025220.878

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.968031
26DAP/20DAP0.854090.146
34DAP/26DAP0.966320.94
51DAP/34DAP0.81370.22
52DAP/51DAP1.156930.467
53DAP/52DAP1.016270.944
55DAP/53DAP1.087940.848
57DAP/55DAP1.158970.643
62DAP/57DAP1.062670.833
68DAP/62DAP0.985780.885
68DAP/14DAP1.181760.2

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.994820.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.382861
Mature Green Tomato/Ripe Tomato1.205690.948
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.296290.224
Mature Eggplant/Ripe Tomato0.05821

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.3604
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.1156
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.276540.426
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.034390.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.11268
DC3000/delta hrp 6h1.071581
DC3000/delta hrp 12h0.984441
DC3000/delta hrp 24h0.80550.285

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.093360.556
DC3000 delta B/DC3000 delta AB1.00291

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.714161
Exp 36h0.724970.456
Exp 60h0.756370.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999071
Var 0h1.174330.782
Var 12h I row2-row10.90830.418
Var 12h NI row2-row10.944490.82
Var 36h I row2-row11.030071
Var 36h NI row2-row11.976531
Var 60h I row2-row10.984990.952
Var 60h NI row2-row10.947670.866
Time course 0hI-0hNI1.025540.852
Time course 12hI-12hNI1.044980.684
Time course 36hI-36hNI0.940390.306
Time course 60hI-60hNI0.987131

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.951870.348
transgenic ySAMdc/azygous control (breaker)1.289671
transgenic ySAMdc/azygous control (red)1.041071

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.992960.588

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.256160.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.726970.088
Manapal/WT (break)2.053120.14
Manapal/WT (red)0.82140.503