Expression of 1-1-3.3.19.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.92410.596
27DAP/17DAP1.232530.905
39DAP/27DAP1.102821
41DAP/39DAP1.026371
42DAP/41DAP1.045381
43DAP/42DAP1.265950.466
47DAP/43DAP1.344310.68
52DAP/47DAP1.079420.774
57DAP/52DAP1.819030.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.051930.522
17DAP/reference0.881670.053
27DAP/reference1.076660.569
39DAP/reference1.006610.941
41DAP/reference0.946950.542
42DAP/reference0.928580.12
43DAP/reference0.993690.84
47DAP/reference1.00230.72
52DAP/reference1.128930.149
57DAP/reference1.189030.05

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.131130.372
27DAP/17DAP1.08610.677
39DAP/27DAP0.947720.673
41DAP/39DAP1.061530.774
42DAP/41DAP1.008930.887
43DAP/42DAP0.852620.256
47DAP/43DAP1.020931
52DAP/47DAP0.80450.128
57DAP/52DAP1.024651
57DAP/7DAP0.823691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.90350.157
17DAP/reference1.043410.971
27DAP/reference0.99270.698
39DAP/reference0.85740.126
41DAP/reference0.705010.02
42DAP/reference0.640420.011
43DAP/reference0.952060.305
47DAP/reference0.917580.222
52DAP/reference0.846470.057
57DAP/reference0.893580.086

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931950.412
17DAP/reference0.761650.005
27DAP/reference0.753450.09
39DAP/reference0.790530.015
41DAP/reference0.826970.043
42DAP/reference0.960950.392
43DAP/reference0.814310.051
47DAP/reference0.919970.11
52DAP/reference0.776480.009
57DAP/reference0.767960.043

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.009930.804
17DAP/reference0.902890.092
27DAP/reference1.033110.834
39DAP/reference0.927210.111
41DAP/reference0.9910.754
42DAP/reference0.938150.361
43DAP/reference0.917380.267
47DAP/reference0.998930.687
52DAP/reference1.766680.237
57DAP/reference1.070330.625

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.942741
26DAP/20DAP1.09020.762
34DAP/26DAP1.096971
51DAP/34DAP1.00640.988
52DAP/51DAP0.918421
53DAP/52DAP0.809180.329
55DAP/53DAP1.02650.976
57DAP/55DAP1.078940.915
62DAP/57DAP1.10010.902
68DAP/62DAP1.339240.29
68DAP/14DAP1.467260.17

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.845040.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.223270.113
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.463990.056
Ripe Pepper/Ripe Tomato1.590461
Mature Eggplant/Ripe Tomato1.37399

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.10061
1-1-2/M821.11914
12-2/M82N/AN/A
12-4/M820.94173
1-3/M821.88553
2-1-1/M820.73482
2-1/M821.133281
2-6/M820.98225
3-2/M821.15311
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.273631
5-3/M821.081340.572
6-2/M820.97857
6-3/M821.03951
7-1/M820.58295
7-2/M821.19128
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.109460.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.74180.294
IL12-4/WTpooled0.948321
IL1-4/WTpooled1.322491
WT/WTpooled1.02511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035291

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941541
DC3000/delta hrp 6h1.131351
DC3000/delta hrp 12h1.030131
DC3000/delta hrp 24h0.978270.861

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.088870.25
DC3000 delta B/DC3000 delta AB1.191980.304

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.991481
Exp 36h1.300490.326
Exp 60h1.170430.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001571
Var 0h1.180210.202
Var 12h I row2-row11.040310.613
Var 12h NI row2-row11.014131
Var 36h I row2-row11.122710.489
Var 36h NI row2-row10.930591
Var 60h I row2-row10.820640.285
Var 60h NI row2-row10.928991
Time course 0hI-0hNI0.985380.97
Time course 12hI-12hNI1.020470.82
Time course 36hI-36hNI1.057710.722
Time course 60hI-60hNI0.975740.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967380.348
transgenic ySAMdc/azygous control (breaker)1.010221
transgenic ySAMdc/azygous control (red)0.996121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.098490.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.985680.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.991211
Manapal/WT (break)1.387810.13
Manapal/WT (red)0.864380.503