Expression of 1-1-3.3.19.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.433280.166
27DAP/17DAP1.124960.883
39DAP/27DAP0.974950.719
41DAP/39DAP0.873820.501
42DAP/41DAP0.946791
43DAP/42DAP1.032581
47DAP/43DAP0.998220.959
52DAP/47DAP1.248560.665
57DAP/52DAP1.018840.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.004350.661
17DAP/reference0.97030.597
27DAP/reference1.093490.457
39DAP/reference0.883260.068
41DAP/reference0.883870.085
42DAP/reference1.058320.931
43DAP/reference0.986720.763
47DAP/reference1.140630.391
52DAP/reference1.541990.096
57DAP/reference1.398620.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.998920.847
27DAP/17DAP1.12680.576
39DAP/27DAP0.948780.703
41DAP/39DAP1.024120.883
42DAP/41DAP0.988840.84
43DAP/42DAP0.776530.085
47DAP/43DAP0.863020.31
52DAP/47DAP1.125660.63
57DAP/52DAP1.414290.155
57DAP/7DAP1.084251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011951
17DAP/reference0.87630.108
27DAP/reference1.013180.748
39DAP/reference1.010491
41DAP/reference1.062960.891
42DAP/reference0.886970.144
43DAP/reference1.060551
47DAP/reference0.960680.671
52DAP/reference1.030851
57DAP/reference0.964440.458

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876020.222
17DAP/reference0.88740.201
27DAP/reference1.242010.38
39DAP/reference1.414150.041
41DAP/reference1.519280.011
42DAP/reference1.250070.016
43DAP/reference1.010350.748
47DAP/reference0.969270.459
52DAP/reference0.985760.407
57DAP/reference0.87920.169

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116250.23
17DAP/reference0.974460.668
27DAP/reference1.033990.871
39DAP/reference0.884990.063
41DAP/reference0.953820.264
42DAP/reference1.383820.258
43DAP/reference1.302260.202
47DAP/reference1.193450.339
52DAP/reference0.902180.334
57DAP/reference1.562080.245

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.50050.945
26DAP/20DAP1.143160.635
34DAP/26DAP1.323030.542
51DAP/34DAP1.644040.677
52DAP/51DAP1.622460.068
53DAP/52DAP0.943220.797
55DAP/53DAP1.528380.055
57DAP/55DAP0.823450.49
62DAP/57DAP0.802370.28
68DAP/62DAP1.395230.464
68DAP/14DAP1.340.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.433150.099

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.427980.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.203251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.83582
12-2/M82N/AN/A
12-4/M821.311130.655
1-3/M821.02504
2-1-1/M821.18165
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.95365
4-3/M821.46223
5-3/M820.78380.395
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.31804
7-2/M820.9115
9-3-2/M821.002091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.853310.277
IL2-6/WTpooled0.574430.473
IL7-5/WTpooled0.723141
IL7-3/WTpooled2.034181
IL12-4/WTpooled1.093260.891
IL1-4/WTpooled1.515650.426
WT/WTpooled1.04221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.030881

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941351
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.253331
DC3000/delta hrp 24h0.622740.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.98031
DC3000 delta B/DC3000 delta AB0.85560.23

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.028731
Var 0h1.059520.259
Var 12h I row2-row11.093950.242
Var 12h NI row2-row11.019851
Var 36h I row2-row10.898741
Var 36h NI row2-row11.021721
Var 60h I row2-row11.478881
Var 60h NI row2-row11.058090.904
Time course 0hI-0hNI1.010271
Time course 12hI-12hNI0.966130.698
Time course 36hI-36hNI0.944410.225
Time course 60hI-60hNI0.796110.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.526060.862
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.77931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023191

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.332860.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.261670.413