Expression of 1-1-3.3.19.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43328 | 0.166 |
27DAP/17DAP | 1.12496 | 0.883 |
39DAP/27DAP | 0.97495 | 0.719 |
41DAP/39DAP | 0.87382 | 0.501 |
42DAP/41DAP | 0.94679 | 1 |
43DAP/42DAP | 1.03258 | 1 |
47DAP/43DAP | 0.99822 | 0.959 |
52DAP/47DAP | 1.24856 | 0.665 |
57DAP/52DAP | 1.01884 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00435 | 0.661 |
17DAP/reference | 0.9703 | 0.597 |
27DAP/reference | 1.09349 | 0.457 |
39DAP/reference | 0.88326 | 0.068 |
41DAP/reference | 0.88387 | 0.085 |
42DAP/reference | 1.05832 | 0.931 |
43DAP/reference | 0.98672 | 0.763 |
47DAP/reference | 1.14063 | 0.391 |
52DAP/reference | 1.54199 | 0.096 |
57DAP/reference | 1.39862 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99892 | 0.847 |
27DAP/17DAP | 1.1268 | 0.576 |
39DAP/27DAP | 0.94878 | 0.703 |
41DAP/39DAP | 1.02412 | 0.883 |
42DAP/41DAP | 0.98884 | 0.84 |
43DAP/42DAP | 0.77653 | 0.085 |
47DAP/43DAP | 0.86302 | 0.31 |
52DAP/47DAP | 1.12566 | 0.63 |
57DAP/52DAP | 1.41429 | 0.155 |
57DAP/7DAP | 1.08425 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01195 | 1 |
17DAP/reference | 0.8763 | 0.108 |
27DAP/reference | 1.01318 | 0.748 |
39DAP/reference | 1.01049 | 1 |
41DAP/reference | 1.06296 | 0.891 |
42DAP/reference | 0.88697 | 0.144 |
43DAP/reference | 1.06055 | 1 |
47DAP/reference | 0.96068 | 0.671 |
52DAP/reference | 1.03085 | 1 |
57DAP/reference | 0.96444 | 0.458 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87602 | 0.222 |
17DAP/reference | 0.8874 | 0.201 |
27DAP/reference | 1.24201 | 0.38 |
39DAP/reference | 1.41415 | 0.041 |
41DAP/reference | 1.51928 | 0.011 |
42DAP/reference | 1.25007 | 0.016 |
43DAP/reference | 1.01035 | 0.748 |
47DAP/reference | 0.96927 | 0.459 |
52DAP/reference | 0.98576 | 0.407 |
57DAP/reference | 0.8792 | 0.169 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11625 | 0.23 |
17DAP/reference | 0.97446 | 0.668 |
27DAP/reference | 1.03399 | 0.871 |
39DAP/reference | 0.88499 | 0.063 |
41DAP/reference | 0.95382 | 0.264 |
42DAP/reference | 1.38382 | 0.258 |
43DAP/reference | 1.30226 | 0.202 |
47DAP/reference | 1.19345 | 0.339 |
52DAP/reference | 0.90218 | 0.334 |
57DAP/reference | 1.56208 | 0.245 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.5005 | 0.945 |
26DAP/20DAP | 1.14316 | 0.635 |
34DAP/26DAP | 1.32303 | 0.542 |
51DAP/34DAP | 1.64404 | 0.677 |
52DAP/51DAP | 1.62246 | 0.068 |
53DAP/52DAP | 0.94322 | 0.797 |
55DAP/53DAP | 1.52838 | 0.055 |
57DAP/55DAP | 0.82345 | 0.49 |
62DAP/57DAP | 0.80237 | 0.28 |
68DAP/62DAP | 1.39523 | 0.464 |
68DAP/14DAP | 1.34 | 0.211 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.43315 | 0.099 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.42798 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.20325 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.83582 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.31113 | 0.655 |
1-3/M82 | 1.02504 | |
2-1-1/M82 | 1.18165 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.95365 | |
4-3/M82 | 1.46223 | |
5-3/M82 | 0.7838 | 0.395 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.31804 | |
7-2/M82 | 0.9115 | |
9-3-2/M82 | 1.00209 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.85331 | 0.277 |
IL2-6/WTpooled | 0.57443 | 0.473 |
IL7-5/WTpooled | 0.72314 | 1 |
IL7-3/WTpooled | 2.03418 | 1 |
IL12-4/WTpooled | 1.09326 | 0.891 |
IL1-4/WTpooled | 1.51565 | 0.426 |
WT/WTpooled | 1.0422 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03088 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94135 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.25333 | 1 |
DC3000/delta hrp 24h | 0.62274 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98031 | |
DC3000 delta B/DC3000 delta AB | 0.8556 | 0.23 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02873 | 1 |
Var 0h | 1.05952 | 0.259 |
Var 12h I row2-row1 | 1.09395 | 0.242 |
Var 12h NI row2-row1 | 1.01985 | 1 |
Var 36h I row2-row1 | 0.89874 | 1 |
Var 36h NI row2-row1 | 1.02172 | 1 |
Var 60h I row2-row1 | 1.47888 | 1 |
Var 60h NI row2-row1 | 1.05809 | 0.904 |
Time course 0hI-0hNI | 1.01027 | 1 |
Time course 12hI-12hNI | 0.96613 | 0.698 |
Time course 36hI-36hNI | 0.94441 | 0.225 |
Time course 60hI-60hNI | 0.79611 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.52606 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.7793 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02319 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.33286 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.26167 | 0.413 |
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