Expression of 1-1-3.3.19.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24355 | 0.755 |
27DAP/17DAP | 1.25363 | 0.761 |
39DAP/27DAP | 0.99307 | 0.782 |
41DAP/39DAP | 1.10011 | 0.88 |
42DAP/41DAP | 1.15913 | 0.886 |
43DAP/42DAP | 1.1098 | 0.88 |
47DAP/43DAP | 1.12104 | 0.769 |
52DAP/47DAP | 0.78261 | 0.461 |
57DAP/52DAP | 1.04662 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88283 | 0.224 |
17DAP/reference | 0.85731 | 0.097 |
27DAP/reference | 0.80901 | 0.013 |
39DAP/reference | 0.99077 | 0.841 |
41DAP/reference | 0.75869 | 0.031 |
42DAP/reference | 1.3804 | 0.003 |
43DAP/reference | 0.99235 | 0.82 |
47DAP/reference | 1.01543 | 1 |
52DAP/reference | 1.06072 | 0.878 |
57DAP/reference | 1.07875 | 0.355 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89251 | 0.131 |
27DAP/17DAP | 1.00813 | 0.98 |
39DAP/27DAP | 1.04244 | 0.677 |
41DAP/39DAP | 0.97641 | 0.986 |
42DAP/41DAP | 1.00536 | 0.934 |
43DAP/42DAP | 1.03013 | 0.699 |
47DAP/43DAP | 0.96308 | 0.722 |
52DAP/47DAP | 0.96792 | 0.893 |
57DAP/52DAP | 0.98293 | 0.768 |
57DAP/7DAP | 0.88163 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97574 | 0.55 |
17DAP/reference | 1.11763 | 0.199 |
27DAP/reference | 1.10544 | 0.107 |
39DAP/reference | 1.44859 | 0.016 |
41DAP/reference | 1.25906 | 0.018 |
42DAP/reference | 1.45888 | 0.021 |
43DAP/reference | 1.09441 | 0.707 |
47DAP/reference | 0.94442 | 0.504 |
52DAP/reference | 1.00461 | 0.74 |
57DAP/reference | 1.05932 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73505 | 0.029 |
17DAP/reference | 0.87745 | 0.17 |
27DAP/reference | 0.97089 | 0.483 |
39DAP/reference | 0.91083 | 0.113 |
41DAP/reference | 0.96615 | 0.412 |
42DAP/reference | 0.94528 | 0.392 |
43DAP/reference | 0.96169 | 0.494 |
47DAP/reference | 0.87717 | 0.047 |
52DAP/reference | 0.92583 | 0.203 |
57DAP/reference | 0.82397 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97876 | 0.566 |
17DAP/reference | 1.01457 | 0.918 |
27DAP/reference | 0.96404 | 0.397 |
39DAP/reference | 1.09062 | 0.33 |
41DAP/reference | 1.06498 | 0.554 |
42DAP/reference | 1.44209 | 0.108 |
43DAP/reference | 1.40137 | 0.05 |
47DAP/reference | 1.17178 | 0.228 |
52DAP/reference | 1.05852 | 0.779 |
57DAP/reference | 1.42027 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.3629 | 0.966 |
26DAP/20DAP | 0.95316 | 1 |
34DAP/26DAP | 1.04769 | 0.819 |
51DAP/34DAP | 1.10079 | 0.293 |
52DAP/51DAP | 1.02223 | 0.836 |
53DAP/52DAP | 0.80788 | 0.703 |
55DAP/53DAP | 0.93836 | 0.363 |
57DAP/55DAP | 0.99362 | 0.911 |
62DAP/57DAP | 1.04136 | 1 |
68DAP/62DAP | 0.97137 | 0.787 |
68DAP/14DAP | 1.24111 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85052 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.60305 | |
Mature Green Tomato/Ripe Tomato | 1.07198 | 0.881 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.23076 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.27512 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9469 | 0.944 |
1-1-2/M82 | 0.93622 | 1 |
12-2/M82 | 0.63574 | 0.955 |
12-4/M82 | 1.49646 | 1 |
1-3/M82 | 1.35115 | |
2-1-1/M82 | 1.68002 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.39059 | 0.505 |
3-2/M82 | 1.05508 | |
4-1-1/M82 | 1.29221 | |
4-1/M82 | 0.70771 | 0.737 |
4-3-2/M82 | 0.9317 | |
4-3/M82 | 2.15077 | 0.268 |
5-3/M82 | 0.87098 | 1 |
6-2/M82 | 2.58804 | |
6-3/M82 | 0.68286 | 0.982 |
7-1/M82 | 0.89388 | |
7-2/M82 | 1.00159 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.60366 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.32107 | |
IL12-4/WTpooled | 1.05863 | 0.673 |
IL1-4/WTpooled | 0.99651 | 1 |
WT/WTpooled | 1.09744 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96665 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98867 | 1 |
DC3000/delta hrp 6h | 1.00884 | 0.95 |
DC3000/delta hrp 12h | 1.16361 | 1 |
DC3000/delta hrp 24h | 1.18378 | 0.165 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85793 | 0.074 |
DC3000 delta B/DC3000 delta AB | 0.99472 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00805 | 1 |
Exp 36h | 1.04868 | 1 |
Exp 60h | 1.16319 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93644 | 1 |
Var 0h | 0.53068 | 0.258 |
Var 12h I row2-row1 | 1.07358 | 0.613 |
Var 12h NI row2-row1 | 0.92442 | 0.627 |
Var 36h I row2-row1 | 0.8784 | 0.805 |
Var 36h NI row2-row1 | 0.87057 | 0.584 |
Var 60h I row2-row1 | 1.33894 | 0.562 |
Var 60h NI row2-row1 | 1.18702 | 0.904 |
Time course 0hI-0hNI | 1.05891 | 0.799 |
Time course 12hI-12hNI | 0.9572 | 0.612 |
Time course 36hI-36hNI | 0.947 | 0.066 |
Time course 60hI-60hNI | 1.053 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94394 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 2.73024 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.10015 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02986 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02902 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93083 | 1 |
Manapal/WT (break) | 1.09626 | 1 |
Manapal/WT (red) | 0.77601 | 0.216 |
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