Expression of 1-1-3.3.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.243550.755
27DAP/17DAP1.253630.761
39DAP/27DAP0.993070.782
41DAP/39DAP1.100110.88
42DAP/41DAP1.159130.886
43DAP/42DAP1.10980.88
47DAP/43DAP1.121040.769
52DAP/47DAP0.782610.461
57DAP/52DAP1.046621

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.882830.224
17DAP/reference0.857310.097
27DAP/reference0.809010.013
39DAP/reference0.990770.841
41DAP/reference0.758690.031
42DAP/reference1.38040.003
43DAP/reference0.992350.82
47DAP/reference1.015431
52DAP/reference1.060720.878
57DAP/reference1.078750.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.892510.131
27DAP/17DAP1.008130.98
39DAP/27DAP1.042440.677
41DAP/39DAP0.976410.986
42DAP/41DAP1.005360.934
43DAP/42DAP1.030130.699
47DAP/43DAP0.963080.722
52DAP/47DAP0.967920.893
57DAP/52DAP0.982930.768
57DAP/7DAP0.881631

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975740.55
17DAP/reference1.117630.199
27DAP/reference1.105440.107
39DAP/reference1.448590.016
41DAP/reference1.259060.018
42DAP/reference1.458880.021
43DAP/reference1.094410.707
47DAP/reference0.944420.504
52DAP/reference1.004610.74
57DAP/reference1.059320.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.735050.029
17DAP/reference0.877450.17
27DAP/reference0.970890.483
39DAP/reference0.910830.113
41DAP/reference0.966150.412
42DAP/reference0.945280.392
43DAP/reference0.961690.494
47DAP/reference0.877170.047
52DAP/reference0.925830.203
57DAP/reference0.823970.026

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978760.566
17DAP/reference1.014570.918
27DAP/reference0.964040.397
39DAP/reference1.090620.33
41DAP/reference1.064980.554
42DAP/reference1.442090.108
43DAP/reference1.401370.05
47DAP/reference1.171780.228
52DAP/reference1.058520.779
57DAP/reference1.420270.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.36290.966
26DAP/20DAP0.953161
34DAP/26DAP1.047690.819
51DAP/34DAP1.100790.293
52DAP/51DAP1.022230.836
53DAP/52DAP0.807880.703
55DAP/53DAP0.938360.363
57DAP/55DAP0.993620.911
62DAP/57DAP1.041361
68DAP/62DAP0.971370.787
68DAP/14DAP1.241110.558

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.850520.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.60305
Mature Green Tomato/Ripe Tomato1.071980.881
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.230760.224
Mature Eggplant/Ripe Tomato0.275120.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.94690.944
1-1-2/M820.936221
12-2/M820.635740.955
12-4/M821.496461
1-3/M821.35115
2-1-1/M821.68002
2-1/M82N/AN/A
2-6/M821.390590.505
3-2/M821.05508
4-1-1/M821.29221
4-1/M820.707710.737
4-3-2/M820.9317
4-3/M822.150770.268
5-3/M820.870981
6-2/M822.58804
6-3/M820.682860.982
7-1/M820.89388
7-2/M821.00159
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.60366
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.32107
IL12-4/WTpooled1.058630.673
IL1-4/WTpooled0.996511
WT/WTpooled1.097440.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.966651

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.988671
DC3000/delta hrp 6h1.008840.95
DC3000/delta hrp 12h1.163611
DC3000/delta hrp 24h1.183780.165

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.857930.074
DC3000 delta B/DC3000 delta AB0.994721

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.008051
Exp 36h1.048681
Exp 60h1.163190.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.936441
Var 0h0.530680.258
Var 12h I row2-row11.073580.613
Var 12h NI row2-row10.924420.627
Var 36h I row2-row10.87840.805
Var 36h NI row2-row10.870570.584
Var 60h I row2-row11.338940.562
Var 60h NI row2-row11.187020.904
Time course 0hI-0hNI1.058910.799
Time course 12hI-12hNI0.95720.612
Time course 36hI-36hNI0.9470.066
Time course 60hI-60hNI1.0530.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.943940.286
transgenic ySAMdc/azygous control (breaker)2.730240.172
transgenic ySAMdc/azygous control (red)1.100150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.029860.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.029021

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.930831
Manapal/WT (break)1.096261
Manapal/WT (red)0.776010.216