Expression of 1-1-3.3.2.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82725 | 0.347 |
27DAP/17DAP | 1.06831 | 1 |
39DAP/27DAP | 2.48478 | 0.025 |
41DAP/39DAP | 0.67952 | 0.114 |
42DAP/41DAP | 1.08429 | 1 |
43DAP/42DAP | 0.94286 | 0.858 |
47DAP/43DAP | 0.34787 | 0.046 |
52DAP/47DAP | 1.13305 | 0.769 |
57DAP/52DAP | 0.96896 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29008 | 0.059 |
17DAP/reference | 1.07818 | 0.369 |
27DAP/reference | 1.04379 | 0.909 |
39DAP/reference | 1.01889 | 0.903 |
41DAP/reference | 0.88702 | 0.341 |
42DAP/reference | 1.53508 | 0.001 |
43DAP/reference | 0.9647 | 0.429 |
47DAP/reference | 0.89675 | 0.106 |
52DAP/reference | 0.7641 | 0.031 |
57DAP/reference | 0.77496 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68855 | 0.03 |
27DAP/17DAP | 1.1885 | 0.3 |
39DAP/27DAP | 1.48164 | 0.067 |
41DAP/39DAP | 1.95365 | 0.028 |
42DAP/41DAP | 0.76886 | 0.04 |
43DAP/42DAP | 0.77625 | 0.034 |
47DAP/43DAP | 1.35053 | 0.015 |
52DAP/47DAP | 0.74182 | 0.062 |
57DAP/52DAP | 1.57317 | 0.034 |
57DAP/7DAP | 1.00746 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23396 | 0.157 |
17DAP/reference | 1.24664 | 0.006 |
27DAP/reference | 1.75442 | 0.006 |
39DAP/reference | 1.07817 | 0.391 |
41DAP/reference | 1.3601 | 0.016 |
42DAP/reference | 1.69299 | 0.008 |
43DAP/reference | 1.18669 | 0.008 |
47DAP/reference | 1.8273 | 0.032 |
52DAP/reference | 1.56141 | 0.007 |
57DAP/reference | 1.29737 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29526 | 0.154 |
17DAP/reference | 1.18074 | 0.216 |
27DAP/reference | 2.27519 | 0.012 |
39DAP/reference | 1.75389 | 0.011 |
41DAP/reference | 2.42035 | 0.005 |
42DAP/reference | 2.02599 | 0.007 |
43DAP/reference | 1.66431 | 0.009 |
47DAP/reference | 1.71731 | 0.008 |
52DAP/reference | 1.41997 | 0.007 |
57DAP/reference | 1.45797 | 0.083 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28256 | 0.053 |
17DAP/reference | 1.24766 | 0.151 |
27DAP/reference | 1.23588 | 0.025 |
39DAP/reference | 1.45891 | 0.004 |
41DAP/reference | 1.44304 | 0.009 |
42DAP/reference | 1.69688 | 0.007 |
43DAP/reference | 1.15452 | 0.426 |
47DAP/reference | 0.99055 | 0.626 |
52DAP/reference | 1.31382 | 0.063 |
57DAP/reference | 1.21496 | 0.1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93018 | 1 |
26DAP/20DAP | 1.09403 | 0.647 |
34DAP/26DAP | 0.83718 | 0.619 |
51DAP/34DAP | 1.20616 | 0.365 |
52DAP/51DAP | 0.91108 | 1 |
53DAP/52DAP | 1.05211 | 0.83 |
55DAP/53DAP | 0.90977 | 0.5 |
57DAP/55DAP | 1.50386 | 0.274 |
62DAP/57DAP | 0.92285 | 0.994 |
68DAP/62DAP | 0.85752 | 0.314 |
68DAP/14DAP | 0.76289 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.73785 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.04177 | 0.287 |
Mature Green Tomato/Ripe Tomato | 1.10277 | 1 |
Immature Eggplant/Mature Eggplant | 1.03534 | 0.462 |
Ripe Pepper/Ripe Tomato | 0.81929 | 1 |
Mature Eggplant/Ripe Tomato | 1.10789 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.76881 | 0.907 |
1-1-2/M82 | 1.36475 | 1 |
12-2/M82 | 1.13888 | 0.421 |
12-4/M82 | 0.70208 | 0.358 |
1-3/M82 | 1.5543 | |
2-1-1/M82 | 0.85972 | 1 |
2-1/M82 | 0.81176 | |
2-6/M82 | 0.65788 | 0.501 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.80704 | 1 |
4-1/M82 | 0.59906 | |
4-3-2/M82 | 1.13573 | 1 |
4-3/M82 | 0.75519 | 0.46 |
5-3/M82 | 1.0938 | 1 |
6-2/M82 | 2.87415 | |
6-3/M82 | 1.03267 | 1 |
7-1/M82 | 1.15473 | |
7-2/M82 | 1.31553 | 0.291 |
9-3-2/M82 | 0.8152 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76667 | 0.321 |
IL2-6/WTpooled | 0.85146 | 1 |
IL7-5/WTpooled | 0.72973 | 1 |
IL7-3/WTpooled | 1.12766 | 1 |
IL12-4/WTpooled | 0.76249 | 0.554 |
IL1-4/WTpooled | 0.81389 | 0.476 |
WT/WTpooled | 0.98277 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09662 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16344 | 0.758 |
DC3000/delta hrp 6h | 1.14913 | 0.95 |
DC3000/delta hrp 12h | 0.9502 | 1 |
DC3000/delta hrp 24h | 1.83654 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.51575 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.62992 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10756 | 1 |
Exp 36h | 1.53556 | 0.409 |
Exp 60h | 1.2943 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95725 | 1 |
Var 0h | 1.13946 | 0.258 |
Var 12h I row2-row1 | 1.16167 | 0.406 |
Var 12h NI row2-row1 | 1.52069 | 0.235 |
Var 36h I row2-row1 | 1.47501 | 0.298 |
Var 36h NI row2-row1 | 0.72682 | 0.329 |
Var 60h I row2-row1 | 0.98163 | 0.952 |
Var 60h NI row2-row1 | 0.74696 | 0.359 |
Time course 0hI-0hNI | 0.91907 | 0.472 |
Time course 12hI-12hNI | 1.24242 | 0.072 |
Time course 36hI-36hNI | 2.11474 | 0.005 |
Time course 60hI-60hNI | 3.11339 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11331 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 0.86179 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.04578 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11755 | 0.057 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.59886 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0239 | 1 |
Manapal/WT (break) | 0.93515 | 1 |
Manapal/WT (red) | 1.3027 | 0.413 |
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