Expression of 1-1-3.3.2.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.827250.347
27DAP/17DAP1.068311
39DAP/27DAP2.484780.025
41DAP/39DAP0.679520.114
42DAP/41DAP1.084291
43DAP/42DAP0.942860.858
47DAP/43DAP0.347870.046
52DAP/47DAP1.133050.769
57DAP/52DAP0.968960.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.290080.059
17DAP/reference1.078180.369
27DAP/reference1.043790.909
39DAP/reference1.018890.903
41DAP/reference0.887020.341
42DAP/reference1.535080.001
43DAP/reference0.96470.429
47DAP/reference0.896750.106
52DAP/reference0.76410.031
57DAP/reference0.774960.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.688550.03
27DAP/17DAP1.18850.3
39DAP/27DAP1.481640.067
41DAP/39DAP1.953650.028
42DAP/41DAP0.768860.04
43DAP/42DAP0.776250.034
47DAP/43DAP1.350530.015
52DAP/47DAP0.741820.062
57DAP/52DAP1.573170.034
57DAP/7DAP1.007461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.233960.157
17DAP/reference1.246640.006
27DAP/reference1.754420.006
39DAP/reference1.078170.391
41DAP/reference1.36010.016
42DAP/reference1.692990.008
43DAP/reference1.186690.008
47DAP/reference1.82730.032
52DAP/reference1.561410.007
57DAP/reference1.297370.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.295260.154
17DAP/reference1.180740.216
27DAP/reference2.275190.012
39DAP/reference1.753890.011
41DAP/reference2.420350.005
42DAP/reference2.025990.007
43DAP/reference1.664310.009
47DAP/reference1.717310.008
52DAP/reference1.419970.007
57DAP/reference1.457970.083

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.282560.053
17DAP/reference1.247660.151
27DAP/reference1.235880.025
39DAP/reference1.458910.004
41DAP/reference1.443040.009
42DAP/reference1.696880.007
43DAP/reference1.154520.426
47DAP/reference0.990550.626
52DAP/reference1.313820.063
57DAP/reference1.214960.1

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.930181
26DAP/20DAP1.094030.647
34DAP/26DAP0.837180.619
51DAP/34DAP1.206160.365
52DAP/51DAP0.911081
53DAP/52DAP1.052110.83
55DAP/53DAP0.909770.5
57DAP/55DAP1.503860.274
62DAP/57DAP0.922850.994
68DAP/62DAP0.857520.314
68DAP/14DAP0.762890.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.737850.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.041770.287
Mature Green Tomato/Ripe Tomato1.102771
Immature Eggplant/Mature Eggplant1.035340.462
Ripe Pepper/Ripe Tomato0.819291
Mature Eggplant/Ripe Tomato1.107890.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.768810.907
1-1-2/M821.364751
12-2/M821.138880.421
12-4/M820.702080.358
1-3/M821.5543
2-1-1/M820.859721
2-1/M820.81176
2-6/M820.657880.501
3-2/M82N/AN/A
4-1-1/M820.807041
4-1/M820.59906
4-3-2/M821.135731
4-3/M820.755190.46
5-3/M821.09381
6-2/M822.87415
6-3/M821.032671
7-1/M821.15473
7-2/M821.315530.291
9-3-2/M820.81520.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.766670.321
IL2-6/WTpooled0.851461
IL7-5/WTpooled0.729731
IL7-3/WTpooled1.127661
IL12-4/WTpooled0.762490.554
IL1-4/WTpooled0.813890.476
WT/WTpooled0.982771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.096621

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.163440.758
DC3000/delta hrp 6h1.149130.95
DC3000/delta hrp 12h0.95021
DC3000/delta hrp 24h1.836540.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.515750.042
DC3000 delta B/DC3000 delta AB1.629920.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.107561
Exp 36h1.535560.409
Exp 60h1.29430.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.957251
Var 0h1.139460.258
Var 12h I row2-row11.161670.406
Var 12h NI row2-row11.520690.235
Var 36h I row2-row11.475010.298
Var 36h NI row2-row10.726820.329
Var 60h I row2-row10.981630.952
Var 60h NI row2-row10.746960.359
Time course 0hI-0hNI0.919070.472
Time course 12hI-12hNI1.242420.072
Time course 36hI-36hNI2.114740.005
Time course 60hI-60hNI3.113390.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.113310.612
transgenic ySAMdc/azygous control (breaker)0.861790.49
transgenic ySAMdc/azygous control (red)1.045780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.117550.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.598860.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.02391
Manapal/WT (break)0.935151
Manapal/WT (red)1.30270.413