Expression of 1-1-3.3.2.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.48549 | 0.244 |
27DAP/17DAP | 0.57109 | 0.11 |
39DAP/27DAP | 0.86536 | 0.564 |
41DAP/39DAP | 0.95319 | 0.706 |
42DAP/41DAP | 1.15464 | 0.745 |
43DAP/42DAP | 0.95185 | 0.89 |
47DAP/43DAP | 0.9839 | 0.895 |
52DAP/47DAP | 0.86974 | 0.617 |
57DAP/52DAP | 1.17033 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10063 | 0.441 |
17DAP/reference | 1.23144 | 0.032 |
27DAP/reference | 1.03359 | 0.782 |
39DAP/reference | 0.91538 | 0.132 |
41DAP/reference | 1.01523 | 1 |
42DAP/reference | 0.94664 | 0.188 |
43DAP/reference | 1.01642 | 0.758 |
47DAP/reference | 1.00644 | 0.72 |
52DAP/reference | 0.76905 | 0.021 |
57DAP/reference | 0.84134 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.32542 | 0.414 |
27DAP/17DAP | 1.0129 | 1 |
39DAP/27DAP | 0.38518 | 0.029 |
41DAP/39DAP | 0.98155 | 0.986 |
42DAP/41DAP | 1.20034 | 0.251 |
43DAP/42DAP | 0.72524 | 0.022 |
47DAP/43DAP | 1.02612 | 0.957 |
52DAP/47DAP | 1.26197 | 0.681 |
57DAP/52DAP | 1.19615 | 0.971 |
57DAP/7DAP | 0.52827 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68318 | 0.049 |
17DAP/reference | 1.13511 | 0.574 |
27DAP/reference | 1.25717 | 0.371 |
39DAP/reference | 1.16062 | 0.077 |
41DAP/reference | 1.38956 | 0.136 |
42DAP/reference | 0.93212 | 0.458 |
43DAP/reference | 1.22006 | 0.325 |
47DAP/reference | 1.04334 | 0.996 |
52DAP/reference | 1.04621 | 0.526 |
57DAP/reference | 1.53823 | 0.035 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14135 | 0.217 |
17DAP/reference | 1.30798 | 0.063 |
27DAP/reference | 1.08114 | 0.455 |
39DAP/reference | 0.90842 | 0.113 |
41DAP/reference | 1.07064 | 0.599 |
42DAP/reference | 1.10304 | 0.247 |
43DAP/reference | 0.82864 | 0.098 |
47DAP/reference | 1.00799 | 1 |
52DAP/reference | 0.87021 | 0.072 |
57DAP/reference | 0.91284 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30132 | 0.13 |
17DAP/reference | 1.3235 | 0.122 |
27DAP/reference | 1.23178 | 0.373 |
39DAP/reference | 0.97819 | 0.755 |
41DAP/reference | 1.1705 | 0.984 |
42DAP/reference | 1.02455 | 0.979 |
43DAP/reference | 0.96969 | 0.639 |
47DAP/reference | 0.89085 | 0.097 |
52DAP/reference | 1.17106 | 0.79 |
57DAP/reference | 0.89757 | 0.177 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.21323 | 0.966 |
26DAP/20DAP | 1.57561 | 0.099 |
34DAP/26DAP | 0.60696 | 0.073 |
51DAP/34DAP | 0.67845 | 0.06 |
52DAP/51DAP | 0.91317 | 1 |
53DAP/52DAP | 0.87975 | 0.21 |
55DAP/53DAP | 1.24749 | 0.366 |
57DAP/55DAP | 0.89519 | 0.583 |
62DAP/57DAP | 1.20723 | 0.622 |
68DAP/62DAP | 1.70425 | 0.021 |
68DAP/14DAP | 1.12483 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.35423 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.88245 | 0.058 |
Mature Green Tomato/Ripe Tomato | 5.75739 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.1722 | 0.057 |
Ripe Pepper/Ripe Tomato | 2.04489 | |
Mature Eggplant/Ripe Tomato | 50.9045 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92586 | 1 |
IL2-6/WTpooled | 0.96487 | 1 |
IL7-5/WTpooled | 1.10411 | 0.792 |
IL7-3/WTpooled | 1.06096 | 1 |
IL12-4/WTpooled | 0.96652 | 0.581 |
IL1-4/WTpooled | 1.0841 | 1 |
WT/WTpooled | 0.94461 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82939 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9993 | 1 |
DC3000/delta hrp 6h | 1.12543 | 1 |
DC3000/delta hrp 12h | 1.08196 | 1 |
DC3000/delta hrp 24h | 0.46317 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.4746 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.42928 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95551 | 1 |
Exp 36h | 0.66156 | 0.426 |
Exp 60h | 0.5533 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97942 | 1 |
Var 0h | 0.8302 | 1 |
Var 12h I row2-row1 | 0.78839 | 0.338 |
Var 12h NI row2-row1 | 1.06661 | 0.34 |
Var 36h I row2-row1 | 0.92164 | 0.313 |
Var 36h NI row2-row1 | 1.5521 | 0.482 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.03815 | 1 |
Time course 0hI-0hNI | 0.96605 | 0.845 |
Time course 12hI-12hNI | 0.70305 | 0.033 |
Time course 36hI-36hNI | 0.53339 | 0.023 |
Time course 60hI-60hNI | 0.11912 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88725 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.9117 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.18232 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96463 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.53448 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84177 | 0.172 |
Manapal/WT (break) | 1.08355 | 1 |
Manapal/WT (red) | 1.11753 | 1 |
|
|