Expression of 1-1-3.3.2.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.485490.244
27DAP/17DAP0.571090.11
39DAP/27DAP0.865360.564
41DAP/39DAP0.953190.706
42DAP/41DAP1.154640.745
43DAP/42DAP0.951850.89
47DAP/43DAP0.98390.895
52DAP/47DAP0.869740.617
57DAP/52DAP1.170330.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.100630.441
17DAP/reference1.231440.032
27DAP/reference1.033590.782
39DAP/reference0.915380.132
41DAP/reference1.015231
42DAP/reference0.946640.188
43DAP/reference1.016420.758
47DAP/reference1.006440.72
52DAP/reference0.769050.021
57DAP/reference0.841340.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.325420.414
27DAP/17DAP1.01291
39DAP/27DAP0.385180.029
41DAP/39DAP0.981550.986
42DAP/41DAP1.200340.251
43DAP/42DAP0.725240.022
47DAP/43DAP1.026120.957
52DAP/47DAP1.261970.681
57DAP/52DAP1.196150.971
57DAP/7DAP0.528271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.683180.049
17DAP/reference1.135110.574
27DAP/reference1.257170.371
39DAP/reference1.160620.077
41DAP/reference1.389560.136
42DAP/reference0.932120.458
43DAP/reference1.220060.325
47DAP/reference1.043340.996
52DAP/reference1.046210.526
57DAP/reference1.538230.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.141350.217
17DAP/reference1.307980.063
27DAP/reference1.081140.455
39DAP/reference0.908420.113
41DAP/reference1.070640.599
42DAP/reference1.103040.247
43DAP/reference0.828640.098
47DAP/reference1.007991
52DAP/reference0.870210.072
57DAP/reference0.912840.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.301320.13
17DAP/reference1.32350.122
27DAP/reference1.231780.373
39DAP/reference0.978190.755
41DAP/reference1.17050.984
42DAP/reference1.024550.979
43DAP/reference0.969690.639
47DAP/reference0.890850.097
52DAP/reference1.171060.79
57DAP/reference0.897570.177

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.213230.966
26DAP/20DAP1.575610.099
34DAP/26DAP0.606960.073
51DAP/34DAP0.678450.06
52DAP/51DAP0.913171
53DAP/52DAP0.879750.21
55DAP/53DAP1.247490.366
57DAP/55DAP0.895190.583
62DAP/57DAP1.207230.622
68DAP/62DAP1.704250.021
68DAP/14DAP1.124830.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.354230.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.882450.058
Mature Green Tomato/Ripe Tomato5.757390.015
Immature Eggplant/Mature Eggplant0.17220.057
Ripe Pepper/Ripe Tomato2.04489
Mature Eggplant/Ripe Tomato50.90450.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.925861
IL2-6/WTpooled0.964871
IL7-5/WTpooled1.104110.792
IL7-3/WTpooled1.060961
IL12-4/WTpooled0.966520.581
IL1-4/WTpooled1.08411
WT/WTpooled0.944611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.829390.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99931
DC3000/delta hrp 6h1.125431
DC3000/delta hrp 12h1.081961
DC3000/delta hrp 24h0.463170.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.47460.027
DC3000 delta B/DC3000 delta AB0.429280.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.955511
Exp 36h0.661560.426
Exp 60h0.55330.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979421
Var 0h0.83021
Var 12h I row2-row10.788390.338
Var 12h NI row2-row11.066610.34
Var 36h I row2-row10.921640.313
Var 36h NI row2-row11.55210.482
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.038151
Time course 0hI-0hNI0.966050.845
Time course 12hI-12hNI0.703050.033
Time course 36hI-36hNI0.533390.023
Time course 60hI-60hNI0.119120.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.887250.297
transgenic ySAMdc/azygous control (breaker)0.91170.49
transgenic ySAMdc/azygous control (red)1.182320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.964630.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.534480.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.841770.172
Manapal/WT (break)1.083551
Manapal/WT (red)1.117531