Expression of 1-1-3.3.20.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.816270.347
27DAP/17DAP1.618280.677
39DAP/27DAP0.632910.443
41DAP/39DAP1.590960.268
42DAP/41DAP1.197450.85
43DAP/42DAP0.948490.89
47DAP/43DAP1.482120.576
52DAP/47DAP1.047740.946
57DAP/52DAP0.790120.79

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.835340.132
17DAP/reference1.129250.717
27DAP/reference1.177810.782
39DAP/reference1.068080.842
41DAP/reference0.615060.039
42DAP/reference0.878350.064
43DAP/reference0.945670.675
47DAP/reference1.216360.627
52DAP/reference0.929990.58
57DAP/reference0.947090.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.241890.63
27DAP/17DAP1.078291
39DAP/27DAP0.955010.737
41DAP/39DAP1.268390.817
42DAP/41DAP1.152311
43DAP/42DAP1.12399
47DAP/43DAP1.467750.817
52DAP/47DAP1.073040.987
57DAP/52DAP1.179380.941
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.693550.035
17DAP/reference2.012370.026
27DAP/reference1.776720.01
39DAP/reference1.425140.025
41DAP/reference1.617920.045
42DAP/reference1.345740.046
43DAP/reference1.959040.009
47DAP/reference1.509630.272
52DAP/reference2.059650.007
57DAP/reference1.948680.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.827280.056
17DAP/reference0.72330.007
27DAP/reference0.693770.035
39DAP/reference0.794660.011
41DAP/reference0.837340.148
42DAP/reference0.833270.039
43DAP/reference0.77530.054
47DAP/reference0.812330.049
52DAP/reference0.74020.004
57DAP/reference0.788670.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.707060.025
17DAP/reference1.280270.467
27DAP/reference2.201360.029
39DAP/reference1.830260.021
41DAP/reference1.850760.008
42DAP/reference1.546160.027
43DAP/reference1.674480.1
47DAP/reference0.914380.215
52DAP/reference1.792680.103
57DAP/reference1.823080.66

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.82180.961
26DAP/20DAP1.365810.249
34DAP/26DAP1.34011
51DAP/34DAP1.237860.869
52DAP/51DAP1.439980.42
53DAP/52DAP1.602560.753
55DAP/53DAP1.285291
57DAP/55DAP1.817620.643
62DAP/57DAP1.094520.902
68DAP/62DAP1.64370.247
68DAP/14DAP1.722140.119

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.684570.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.968570.611
Immature Eggplant/Mature Eggplant1.086840.485
Ripe Pepper/Ripe Tomato0.67511
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.7364
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.68912
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.75541

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.71227
IL2-6/WTpooled1.009421
IL7-5/WTpooled1.59268
IL7-3/WTpooled0.886331
IL12-4/WTpooled1.116470.785
IL1-4/WTpooled1.374460.426
WT/WTpooled0.929631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.912710.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.788910.599
DC3000/delta hrp 6h1.185351
DC3000/delta hrp 12h1.020651
DC3000/delta hrp 24h0.956260.692

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.75465
DC3000 delta B/DC3000 delta AB0.86621

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.36811
Exp 36h1.000151
Exp 60h0.864740.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995941
Var 0hN/AN/A
Var 12h I row2-row10.960250.948
Var 12h NI row2-row11.0531
Var 36h I row2-row11.711311
Var 36h NI row2-row10.832250.743
Var 60h I row2-row10.723950.374
Var 60h NI row2-row10.764290.904
Time course 0hI-0hNI1.063880.344
Time course 12hI-12hNI0.846180.426
Time course 36hI-36hNI0.843220.129
Time course 60hI-60hNI0.993550.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.084820.36
transgenic ySAMdc/azygous control (breaker)1.768920.248
transgenic ySAMdc/azygous control (red)0.857411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.909010.248

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.826210.084
Manapal/WT (break)0.867811
Manapal/WT (red)0.902530.503