Expression of 1-1-3.3.20.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81627 | 0.347 |
27DAP/17DAP | 1.61828 | 0.677 |
39DAP/27DAP | 0.63291 | 0.443 |
41DAP/39DAP | 1.59096 | 0.268 |
42DAP/41DAP | 1.19745 | 0.85 |
43DAP/42DAP | 0.94849 | 0.89 |
47DAP/43DAP | 1.48212 | 0.576 |
52DAP/47DAP | 1.04774 | 0.946 |
57DAP/52DAP | 0.79012 | 0.79 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83534 | 0.132 |
17DAP/reference | 1.12925 | 0.717 |
27DAP/reference | 1.17781 | 0.782 |
39DAP/reference | 1.06808 | 0.842 |
41DAP/reference | 0.61506 | 0.039 |
42DAP/reference | 0.87835 | 0.064 |
43DAP/reference | 0.94567 | 0.675 |
47DAP/reference | 1.21636 | 0.627 |
52DAP/reference | 0.92999 | 0.58 |
57DAP/reference | 0.94709 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24189 | 0.63 |
27DAP/17DAP | 1.07829 | 1 |
39DAP/27DAP | 0.95501 | 0.737 |
41DAP/39DAP | 1.26839 | 0.817 |
42DAP/41DAP | 1.15231 | 1 |
43DAP/42DAP | 1.12399 | |
47DAP/43DAP | 1.46775 | 0.817 |
52DAP/47DAP | 1.07304 | 0.987 |
57DAP/52DAP | 1.17938 | 0.941 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.69355 | 0.035 |
17DAP/reference | 2.01237 | 0.026 |
27DAP/reference | 1.77672 | 0.01 |
39DAP/reference | 1.42514 | 0.025 |
41DAP/reference | 1.61792 | 0.045 |
42DAP/reference | 1.34574 | 0.046 |
43DAP/reference | 1.95904 | 0.009 |
47DAP/reference | 1.50963 | 0.272 |
52DAP/reference | 2.05965 | 0.007 |
57DAP/reference | 1.94868 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82728 | 0.056 |
17DAP/reference | 0.7233 | 0.007 |
27DAP/reference | 0.69377 | 0.035 |
39DAP/reference | 0.79466 | 0.011 |
41DAP/reference | 0.83734 | 0.148 |
42DAP/reference | 0.83327 | 0.039 |
43DAP/reference | 0.7753 | 0.054 |
47DAP/reference | 0.81233 | 0.049 |
52DAP/reference | 0.7402 | 0.004 |
57DAP/reference | 0.78867 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.70706 | 0.025 |
17DAP/reference | 1.28027 | 0.467 |
27DAP/reference | 2.20136 | 0.029 |
39DAP/reference | 1.83026 | 0.021 |
41DAP/reference | 1.85076 | 0.008 |
42DAP/reference | 1.54616 | 0.027 |
43DAP/reference | 1.67448 | 0.1 |
47DAP/reference | 0.91438 | 0.215 |
52DAP/reference | 1.79268 | 0.103 |
57DAP/reference | 1.82308 | 0.66 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8218 | 0.961 |
26DAP/20DAP | 1.36581 | 0.249 |
34DAP/26DAP | 1.3401 | 1 |
51DAP/34DAP | 1.23786 | 0.869 |
52DAP/51DAP | 1.43998 | 0.42 |
53DAP/52DAP | 1.60256 | 0.753 |
55DAP/53DAP | 1.28529 | 1 |
57DAP/55DAP | 1.81762 | 0.643 |
62DAP/57DAP | 1.09452 | 0.902 |
68DAP/62DAP | 1.6437 | 0.247 |
68DAP/14DAP | 1.72214 | 0.119 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68457 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.96857 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.08684 | 0.485 |
Ripe Pepper/Ripe Tomato | 0.67511 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.7364 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.68912 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.75541 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.71227 | |
IL2-6/WTpooled | 1.00942 | 1 |
IL7-5/WTpooled | 1.59268 | |
IL7-3/WTpooled | 0.88633 | 1 |
IL12-4/WTpooled | 1.11647 | 0.785 |
IL1-4/WTpooled | 1.37446 | 0.426 |
WT/WTpooled | 0.92963 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91271 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.78891 | 0.599 |
DC3000/delta hrp 6h | 1.18535 | 1 |
DC3000/delta hrp 12h | 1.02065 | 1 |
DC3000/delta hrp 24h | 0.95626 | 0.692 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.75465 | |
DC3000 delta B/DC3000 delta AB | 0.86621 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.3681 | 1 |
Exp 36h | 1.00015 | 1 |
Exp 60h | 0.86474 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99594 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.96025 | 0.948 |
Var 12h NI row2-row1 | 1.053 | 1 |
Var 36h I row2-row1 | 1.71131 | 1 |
Var 36h NI row2-row1 | 0.83225 | 0.743 |
Var 60h I row2-row1 | 0.72395 | 0.374 |
Var 60h NI row2-row1 | 0.76429 | 0.904 |
Time course 0hI-0hNI | 1.06388 | 0.344 |
Time course 12hI-12hNI | 0.84618 | 0.426 |
Time course 36hI-36hNI | 0.84322 | 0.129 |
Time course 60hI-60hNI | 0.99355 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08482 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 1.76892 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.85741 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.90901 | 0.248 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.82621 | 0.084 |
Manapal/WT (break) | 0.86781 | 1 |
Manapal/WT (red) | 0.90253 | 0.503 |
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