Expression of 1-1-3.3.3.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3025 | 0.403 |
27DAP/17DAP | 0.76654 | 0.385 |
39DAP/27DAP | 1.27481 | 0.272 |
41DAP/39DAP | 0.8465 | 0.422 |
42DAP/41DAP | 1.08894 | 1 |
43DAP/42DAP | 1.07299 | 1 |
47DAP/43DAP | 0.71485 | 0.239 |
52DAP/47DAP | 1.09083 | 0.847 |
57DAP/52DAP | 0.99432 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94705 | 0.39 |
17DAP/reference | 0.80128 | 0.169 |
27DAP/reference | 0.8587 | 0.029 |
39DAP/reference | 0.88947 | 0.159 |
41DAP/reference | 0.85831 | 0.542 |
42DAP/reference | 0.84513 | 0.037 |
43DAP/reference | 1.24435 | 0.014 |
47DAP/reference | 0.78561 | 0.065 |
52DAP/reference | 1.03463 | 1 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23686 | 0.464 |
27DAP/17DAP | 1.41267 | 0.306 |
39DAP/27DAP | 0.74044 | 0.243 |
41DAP/39DAP | 1.19341 | 0.763 |
42DAP/41DAP | 1.01782 | 0.913 |
43DAP/42DAP | 0.8721 | 0.308 |
47DAP/43DAP | 0.9394 | 0.701 |
52DAP/47DAP | 1.20506 | 0.478 |
57DAP/52DAP | 1.37797 | 0.234 |
57DAP/7DAP | 1.11473 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54222 | 0.049 |
17DAP/reference | 1.09393 | 0.328 |
27DAP/reference | 1.08419 | 0.301 |
39DAP/reference | 1.18967 | 0.038 |
41DAP/reference | 1.19646 | 0.046 |
42DAP/reference | 1.32844 | 0.046 |
43DAP/reference | 1.14269 | 0.226 |
47DAP/reference | 1.25483 | 0.106 |
52DAP/reference | 1.05407 | 0.832 |
57DAP/reference | 1.22458 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56589 | 0.724 |
17DAP/reference | 1.29391 | 0.068 |
27DAP/reference | 1.37212 | 0.061 |
39DAP/reference | 1.3494 | 0.087 |
41DAP/reference | 1.37617 | 0.033 |
42DAP/reference | 1.25835 | 0.021 |
43DAP/reference | 0.87229 | 0.257 |
47DAP/reference | 1.00081 | 0.833 |
52DAP/reference | 1.07009 | 0.417 |
57DAP/reference | 0.80771 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21956 | 0.035 |
17DAP/reference | 0.9966 | 0.778 |
27DAP/reference | 0.98898 | 0.691 |
39DAP/reference | 0.92094 | 0.133 |
41DAP/reference | 0.82443 | 0.05 |
42DAP/reference | 1.20955 | 0.327 |
43DAP/reference | 1.12695 | 0.608 |
47DAP/reference | 0.93572 | 0.383 |
52DAP/reference | 1.45594 | 0.061 |
57DAP/reference | 1.57377 | 0.056 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.80179 | 0.961 |
26DAP/20DAP | 2.56127 | 0.098 |
34DAP/26DAP | 0.65903 | 0.214 |
51DAP/34DAP | 1.29078 | 0.1 |
52DAP/51DAP | 0.93609 | 1 |
53DAP/52DAP | 1.34959 | 0.044 |
55DAP/53DAP | 0.73128 | 0.028 |
57DAP/55DAP | 1.27843 | 0.841 |
62DAP/57DAP | 0.72774 | 0.088 |
68DAP/62DAP | 1.11351 | 0.8 |
68DAP/14DAP | 1.26982 | 0.279 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16233 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.11324 | 0.059 |
Mature Green Tomato/Ripe Tomato | 1.5308 | 0.185 |
Immature Eggplant/Mature Eggplant | 0.9151 | 0.366 |
Ripe Pepper/Ripe Tomato | 1.34757 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.59596 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16205 | 0.877 |
1-1-2/M82 | 1.14082 | 1 |
12-2/M82 | 1.05452 | |
12-4/M82 | 1.09347 | |
1-3/M82 | 1.15616 | 0.479 |
2-1-1/M82 | 1.20803 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.06023 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.02511 | 1 |
4-1/M82 | 0.87066 | |
4-3-2/M82 | 1.66046 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.03322 | 1 |
6-2/M82 | 1.15694 | 1 |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.84273 | 0.803 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.47061 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75333 | 0.243 |
IL2-6/WTpooled | 1.43715 | 0.456 |
IL7-5/WTpooled | 1.26513 | 1 |
IL7-3/WTpooled | 0.81521 | 0.298 |
IL12-4/WTpooled | 1.00632 | 1 |
IL1-4/WTpooled | 1.21865 | 0.426 |
WT/WTpooled | 0.98264 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14246 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03245 | 1 |
DC3000/delta hrp 6h | 1.06758 | 1 |
DC3000/delta hrp 12h | 1.10035 | 1 |
DC3000/delta hrp 24h | 0.93182 | 0.523 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.93046 | 0.183 |
DC3000 delta B/DC3000 delta AB | 0.97873 | 0.873 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91198 | 1 |
Exp 36h | 0.98159 | 0.943 |
Exp 60h | 1.07821 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0324 | 1 |
Var 0h | 0.69416 | 1 |
Var 12h I row2-row1 | 0.89742 | 0.338 |
Var 12h NI row2-row1 | 1.09935 | 0.649 |
Var 36h I row2-row1 | 1.14206 | 0.742 |
Var 36h NI row2-row1 | 1.22433 | 0.482 |
Var 60h I row2-row1 | 0.74683 | 0.285 |
Var 60h NI row2-row1 | 1.08987 | 0.904 |
Time course 0hI-0hNI | 0.98033 | 0.94 |
Time course 12hI-12hNI | 0.96111 | 0.739 |
Time course 36hI-36hNI | 0.93322 | 0.162 |
Time course 60hI-60hNI | 0.55588 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.18889 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.83792 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.04501 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08735 | 0.247 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90979 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.3422 | 0.14 |
Manapal/WT (break) | 1.22088 | 0.381 |
Manapal/WT (red) | 1.09845 | 1 |
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