Expression of 1-1-3.3.3.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.30250.403
27DAP/17DAP0.766540.385
39DAP/27DAP1.274810.272
41DAP/39DAP0.84650.422
42DAP/41DAP1.088941
43DAP/42DAP1.072991
47DAP/43DAP0.714850.239
52DAP/47DAP1.090830.847
57DAP/52DAP0.994320.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.947050.39
17DAP/reference0.801280.169
27DAP/reference0.85870.029
39DAP/reference0.889470.159
41DAP/reference0.858310.542
42DAP/reference0.845130.037
43DAP/reference1.244350.014
47DAP/reference0.785610.065
52DAP/reference1.034631
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.236860.464
27DAP/17DAP1.412670.306
39DAP/27DAP0.740440.243
41DAP/39DAP1.193410.763
42DAP/41DAP1.017820.913
43DAP/42DAP0.87210.308
47DAP/43DAP0.93940.701
52DAP/47DAP1.205060.478
57DAP/52DAP1.377970.234
57DAP/7DAP1.114730.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.542220.049
17DAP/reference1.093930.328
27DAP/reference1.084190.301
39DAP/reference1.189670.038
41DAP/reference1.196460.046
42DAP/reference1.328440.046
43DAP/reference1.142690.226
47DAP/reference1.254830.106
52DAP/reference1.054070.832
57DAP/reference1.224580.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.565890.724
17DAP/reference1.293910.068
27DAP/reference1.372120.061
39DAP/reference1.34940.087
41DAP/reference1.376170.033
42DAP/reference1.258350.021
43DAP/reference0.872290.257
47DAP/reference1.000810.833
52DAP/reference1.070090.417
57DAP/reference0.807710.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.219560.035
17DAP/reference0.99660.778
27DAP/reference0.988980.691
39DAP/reference0.920940.133
41DAP/reference0.824430.05
42DAP/reference1.209550.327
43DAP/reference1.126950.608
47DAP/reference0.935720.383
52DAP/reference1.455940.061
57DAP/reference1.573770.056

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.801790.961
26DAP/20DAP2.561270.098
34DAP/26DAP0.659030.214
51DAP/34DAP1.290780.1
52DAP/51DAP0.936091
53DAP/52DAP1.349590.044
55DAP/53DAP0.731280.028
57DAP/55DAP1.278430.841
62DAP/57DAP0.727740.088
68DAP/62DAP1.113510.8
68DAP/14DAP1.269820.279

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.162330.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.113240.059
Mature Green Tomato/Ripe Tomato1.53080.185
Immature Eggplant/Mature Eggplant0.91510.366
Ripe Pepper/Ripe Tomato1.347570.258
Mature Eggplant/Ripe Tomato1.595961

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.162050.877
1-1-2/M821.140821
12-2/M821.05452
12-4/M821.09347
1-3/M821.156160.479
2-1-1/M821.208030.689
2-1/M82N/AN/A
2-6/M821.06023
3-2/M82N/AN/A
4-1-1/M821.025111
4-1/M820.87066
4-3-2/M821.66046
4-3/M82N/AN/A
5-3/M821.033221
6-2/M821.156941
6-3/M82N/AN/A
7-1/M820.842730.803
7-2/M82N/AN/A
9-3-2/M821.47061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.753330.243
IL2-6/WTpooled1.437150.456
IL7-5/WTpooled1.265131
IL7-3/WTpooled0.815210.298
IL12-4/WTpooled1.006321
IL1-4/WTpooled1.218650.426
WT/WTpooled0.982641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.142460.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032451
DC3000/delta hrp 6h1.067581
DC3000/delta hrp 12h1.100351
DC3000/delta hrp 24h0.931820.523

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.930460.183
DC3000 delta B/DC3000 delta AB0.978730.873

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.911981
Exp 36h0.981590.943
Exp 60h1.078211

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03241
Var 0h0.694161
Var 12h I row2-row10.897420.338
Var 12h NI row2-row11.099350.649
Var 36h I row2-row11.142060.742
Var 36h NI row2-row11.224330.482
Var 60h I row2-row10.746830.285
Var 60h NI row2-row11.089870.904
Time course 0hI-0hNI0.980330.94
Time course 12hI-12hNI0.961110.739
Time course 36hI-36hNI0.933220.162
Time course 60hI-60hNI0.555880.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.188890.297
transgenic ySAMdc/azygous control (breaker)0.837920.251
transgenic ySAMdc/azygous control (red)1.045010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.087350.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.909790.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.34220.14
Manapal/WT (break)1.220880.381
Manapal/WT (red)1.098451