Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.3.3.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.73333	0.739
27DAP/17DAP	0.93548	0.892
39DAP/27DAP	0.80654	0.594
41DAP/39DAP	1.48793	0.685
42DAP/41DAP	0.94671	1
43DAP/42DAP	1.05597	0.937
47DAP/43DAP	0.89939	0.634
52DAP/47DAP	1.58456	0.809
57DAP/52DAP	2.9021	0.826

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.8584	0.067
17DAP/reference	0.87116	0.342
27DAP/reference	0.93128	0.623
39DAP/reference	0.54798	0.333
41DAP/reference	0.80977
42DAP/reference	0.81643	0.002
43DAP/reference	0.9825
47DAP/reference	1.10733	0.223
52DAP/reference	1.251	0.388
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.20734	0.192
27DAP/17DAP	0.44273	0.648
39DAP/27DAP	0.49553
41DAP/39DAP	1.2877	0.719
42DAP/41DAP	1.42492	0.991
43DAP/42DAP	1.62085	0.513
47DAP/43DAP	0.99039	0.939
52DAP/47DAP	1.0479
57DAP/52DAP	1.43263
57DAP/7DAP	0.64991	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00516	1
17DAP/reference	1.1122	0.971
27DAP/reference	1.05164	0.974
39DAP/reference	0.92051	0.307
41DAP/reference	0.90748	0.203
42DAP/reference	0.81273	0.038
43DAP/reference	0.9307	0.334
47DAP/reference	1.25713	0.311
52DAP/reference	0.94494	0.304
57DAP/reference	0.94035	0.26

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94902	0.706
17DAP/reference	0.78068	0.389
27DAP/reference	0.89779	0.352
39DAP/reference	2.40182
41DAP/reference	0.96354	0.481
42DAP/reference	0.80199
43DAP/reference	1.04896	0.865
47DAP/reference	0.97606	0.512
52DAP/reference	N/A	N/A
57DAP/reference	0.49374	0.01

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05591	0.616
17DAP/reference	1.03202	0.775
27DAP/reference	0.99258	0.763
39DAP/reference	0.89657	0.328
41DAP/reference	0.96373	0.512
42DAP/reference	1.07372	0.716
43DAP/reference	0.90251	0.267
47DAP/reference	1.28228	0.901
52DAP/reference	2.17794	0.216
57DAP/reference	1.08455	0.694

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.87915	0.193
26DAP/20DAP	0.54758	0.512
34DAP/26DAP	1.22805	1
51DAP/34DAP	0.68602	0.317
52DAP/51DAP	2.14902	0.163
53DAP/52DAP	1.82987
55DAP/53DAP	0.9715	0.784
57DAP/55DAP	0.99101
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.75744
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.42786	0.591

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.29709	0.277
IL2-6/WTpooled	0.93933	1
IL7-5/WTpooled	1.39302	1
IL7-3/WTpooled	1.00006	1
IL12-4/WTpooled	1.03916	0.695
IL1-4/WTpooled	1.02676	1
WT/WTpooled	0.9908	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A