Expression of 1-1-3.3.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99012 | 0.847 |
27DAP/17DAP | 1.02208 | 1 |
39DAP/27DAP | 2.29517 | 0.02 |
41DAP/39DAP | 1.56942 | 0.278 |
42DAP/41DAP | 3.07717 | 0.018 |
43DAP/42DAP | 1.42894 | 0.698 |
47DAP/43DAP | 1.33266 | 0.394 |
52DAP/47DAP | 0.66949 | 0.214 |
57DAP/52DAP | 1.54654 | 0.87 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81147 | 0.025 |
17DAP/reference | 0.95713 | 0.474 |
27DAP/reference | 1.24828 | 0.152 |
39DAP/reference | 0.81985 | 0.247 |
41DAP/reference | 1.13285 | 0.067 |
42DAP/reference | 1.48733 | 0.182 |
43DAP/reference | 1.13326 | |
47DAP/reference | 1.01939 | 0.764 |
52DAP/reference | 1.45819 | 0.335 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03453 | 0.785 |
27DAP/17DAP | 1.2143 | 0.383 |
39DAP/27DAP | 1.68958 | 0.039 |
41DAP/39DAP | 0.52638 | 0.022 |
42DAP/41DAP | 2.54414 | 0.002 |
43DAP/42DAP | 4.80159 | 0.013 |
47DAP/43DAP | 1.08755 | 0.833 |
52DAP/47DAP | 1.02887 | 0.962 |
57DAP/52DAP | 0.7045 | 0.141 |
57DAP/7DAP | 2.03183 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84886 | 0.077 |
17DAP/reference | 1.10842 | 0.054 |
27DAP/reference | 1.03823 | 0.551 |
39DAP/reference | 0.95437 | 0.354 |
41DAP/reference | 1.07961 | 0.171 |
42DAP/reference | 1.21998 | 0.1 |
43DAP/reference | 0.92739 | 0.1 |
47DAP/reference | 0.92404 | 0.504 |
52DAP/reference | 0.87233 | 0.031 |
57DAP/reference | 0.93567 | 0.149 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96554 | 0.655 |
17DAP/reference | 1.00074 | 0.747 |
27DAP/reference | 1.2073 | 0.446 |
39DAP/reference | 1.08894 | 0.912 |
41DAP/reference | 1.28708 | 0.033 |
42DAP/reference | 1.14729 | 0.5 |
43DAP/reference | 0.99513 | 0.706 |
47DAP/reference | 0.93265 | 0.253 |
52DAP/reference | 1.04074 | 0.789 |
57DAP/reference | 0.8686 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92288 | 0.169 |
17DAP/reference | 1.00295 | 1 |
27DAP/reference | 1.08126 | 0.621 |
39DAP/reference | 1.06078 | 0.203 |
41DAP/reference | 1.01114 | 1 |
42DAP/reference | 1.13932 | 0.459 |
43DAP/reference | 1.00694 | 0.767 |
47DAP/reference | 1.03926 | 1 |
52DAP/reference | 1.03128 | 0.928 |
57DAP/reference | 1.48177 | 0.025 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25444 | 1 |
26DAP/20DAP | 1.1747 | 0.512 |
34DAP/26DAP | 0.99444 | 1 |
51DAP/34DAP | 1.06567 | 0.909 |
52DAP/51DAP | 1.08841 | 0.758 |
53DAP/52DAP | 2.19659 | 0.03 |
55DAP/53DAP | 1.40182 | 0.082 |
57DAP/55DAP | 0.84112 | 0.415 |
62DAP/57DAP | 0.89849 | 0.871 |
68DAP/62DAP | 2.05078 | 0.166 |
68DAP/14DAP | 1.36062 | 0.161 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.0584 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77964 | 0.23 |
Mature Green Tomato/Ripe Tomato | 0.11186 | |
Immature Eggplant/Mature Eggplant | 1.13857 | 0.439 |
Ripe Pepper/Ripe Tomato | 1.6685 | 1 |
Mature Eggplant/Ripe Tomato | 0.84512 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.2753 | 0.877 |
1-1-2/M82 | 1.30723 | 1 |
12-2/M82 | 0.99223 | 1 |
12-4/M82 | 1.54248 | 1 |
1-3/M82 | 2.40484 | 0.26 |
2-1-1/M82 | 1.11614 | 0.764 |
2-1/M82 | 0.70525 | |
2-6/M82 | 0.92479 | 1 |
3-2/M82 | 0.19292 | 0.455 |
4-1-1/M82 | 0.74126 | 0.926 |
4-1/M82 | 1.30431 | 1 |
4-3-2/M82 | 1.13141 | 0.508 |
4-3/M82 | 1.28475 | 0.268 |
5-3/M82 | 1.04919 | 1 |
6-2/M82 | 1.23794 | |
6-3/M82 | 0.94158 | 1 |
7-1/M82 | 0.90701 | 1 |
7-2/M82 | 1.1357 | 1 |
9-3-2/M82 | 1.46193 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03236 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.01103 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.0821 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8244 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02836 | 0.921 |
DC3000/delta hrp 6h | 1.04797 | 1 |
DC3000/delta hrp 12h | 1.17671 | 1 |
DC3000/delta hrp 24h | 0.91996 | 0.447 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.64298 | 0.026 |
DC3000 delta B/DC3000 delta AB | 0.65014 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96459 | 1 |
Exp 36h | 1.07484 | 1 |
Exp 60h | 1.13903 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00732 | 1 |
Var 0h | 0.93769 | 1 |
Var 12h I row2-row1 | 0.81311 | 0.338 |
Var 12h NI row2-row1 | 1.10132 | 1 |
Var 36h I row2-row1 | 0.94643 | 1 |
Var 36h NI row2-row1 | 1.23431 | 0.482 |
Var 60h I row2-row1 | 0.83792 | 0.293 |
Var 60h NI row2-row1 | 1.24476 | 0.904 |
Time course 0hI-0hNI | 0.94151 | 0.629 |
Time course 12hI-12hNI | 0.99006 | 0.972 |
Time course 36hI-36hNI | 0.95017 | 0.306 |
Time course 60hI-60hNI | 0.27702 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.29383 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 1.28589 | 1 |
transgenic ySAMdc/azygous control (red) | 1.10151 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.22358 | 0.026 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87469 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.29609 | 0.093 |
Manapal/WT (break) | 1.28858 | 1 |
Manapal/WT (red) | 1.5148 | 0.222 |
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