Expression of 1-1-3.3.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990120.847
27DAP/17DAP1.022081
39DAP/27DAP2.295170.02
41DAP/39DAP1.569420.278
42DAP/41DAP3.077170.018
43DAP/42DAP1.428940.698
47DAP/43DAP1.332660.394
52DAP/47DAP0.669490.214
57DAP/52DAP1.546540.87

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.811470.025
17DAP/reference0.957130.474
27DAP/reference1.248280.152
39DAP/reference0.819850.247
41DAP/reference1.132850.067
42DAP/reference1.487330.182
43DAP/reference1.13326
47DAP/reference1.019390.764
52DAP/reference1.458190.335
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.034530.785
27DAP/17DAP1.21430.383
39DAP/27DAP1.689580.039
41DAP/39DAP0.526380.022
42DAP/41DAP2.544140.002
43DAP/42DAP4.801590.013
47DAP/43DAP1.087550.833
52DAP/47DAP1.028870.962
57DAP/52DAP0.70450.141
57DAP/7DAP2.031830.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.848860.077
17DAP/reference1.108420.054
27DAP/reference1.038230.551
39DAP/reference0.954370.354
41DAP/reference1.079610.171
42DAP/reference1.219980.1
43DAP/reference0.927390.1
47DAP/reference0.924040.504
52DAP/reference0.872330.031
57DAP/reference0.935670.149

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965540.655
17DAP/reference1.000740.747
27DAP/reference1.20730.446
39DAP/reference1.088940.912
41DAP/reference1.287080.033
42DAP/reference1.147290.5
43DAP/reference0.995130.706
47DAP/reference0.932650.253
52DAP/reference1.040740.789
57DAP/reference0.86860.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.922880.169
17DAP/reference1.002951
27DAP/reference1.081260.621
39DAP/reference1.060780.203
41DAP/reference1.011141
42DAP/reference1.139320.459
43DAP/reference1.006940.767
47DAP/reference1.039261
52DAP/reference1.031280.928
57DAP/reference1.481770.025

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.254441
26DAP/20DAP1.17470.512
34DAP/26DAP0.994441
51DAP/34DAP1.065670.909
52DAP/51DAP1.088410.758
53DAP/52DAP2.196590.03
55DAP/53DAP1.401820.082
57DAP/55DAP0.841120.415
62DAP/57DAP0.898490.871
68DAP/62DAP2.050780.166
68DAP/14DAP1.360620.161

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.05840.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.779640.23
Mature Green Tomato/Ripe Tomato0.11186
Immature Eggplant/Mature Eggplant1.138570.439
Ripe Pepper/Ripe Tomato1.66851
Mature Eggplant/Ripe Tomato0.845121

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.27530.877
1-1-2/M821.307231
12-2/M820.992231
12-4/M821.542481
1-3/M822.404840.26
2-1-1/M821.116140.764
2-1/M820.70525
2-6/M820.924791
3-2/M820.192920.455
4-1-1/M820.741260.926
4-1/M821.304311
4-3-2/M821.131410.508
4-3/M821.284750.268
5-3/M821.049191
6-2/M821.23794
6-3/M820.941581
7-1/M820.907011
7-2/M821.13571
9-3-2/M821.461931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.03236
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.01103
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.08211
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.82440.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.028360.921
DC3000/delta hrp 6h1.047971
DC3000/delta hrp 12h1.176711
DC3000/delta hrp 24h0.919960.447

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.642980.026
DC3000 delta B/DC3000 delta AB0.650140.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.964591
Exp 36h1.074841
Exp 60h1.139030.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007321
Var 0h0.937691
Var 12h I row2-row10.813110.338
Var 12h NI row2-row11.101321
Var 36h I row2-row10.946431
Var 36h NI row2-row11.234310.482
Var 60h I row2-row10.837920.293
Var 60h NI row2-row11.244760.904
Time course 0hI-0hNI0.941510.629
Time course 12hI-12hNI0.990060.972
Time course 36hI-36hNI0.950170.306
Time course 60hI-60hNI0.277020.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.293830.384
transgenic ySAMdc/azygous control (breaker)1.285891
transgenic ySAMdc/azygous control (red)1.101510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.223580.026

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.874690.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.296090.093
Manapal/WT (break)1.288581
Manapal/WT (red)1.51480.222