Expression of 1-1-3.3.3.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02985 | 0.839 |
27DAP/17DAP | 3.17198 | 0.752 |
39DAP/27DAP | 1.11704 | 1 |
41DAP/39DAP | 0.81947 | 0.465 |
42DAP/41DAP | 1.36844 | 1 |
43DAP/42DAP | 1.03652 | 0.937 |
47DAP/43DAP | 0.9102 | 0.609 |
52DAP/47DAP | 2.19472 | 0.249 |
57DAP/52DAP | 1.61064 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72623 | 0.254 |
17DAP/reference | 0.68498 | 0.224 |
27DAP/reference | 0.66103 | |
39DAP/reference | 0.71824 | |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | 0.8337 | |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.9792 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.22363 | |
27DAP/17DAP | 1.30376 | 0.842 |
39DAP/27DAP | 1.82615 | |
41DAP/39DAP | 1.17652 | 1 |
42DAP/41DAP | 1.41592 | 0.635 |
43DAP/42DAP | 1.29647 | 0.585 |
47DAP/43DAP | N/A | N/A |
52DAP/47DAP | 0.87003 | 0.801 |
57DAP/52DAP | 1.14593 | |
57DAP/7DAP | 0.76301 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83333 | 0.138 |
17DAP/reference | 1.10724 | 0.574 |
27DAP/reference | 1.05322 | 0.804 |
39DAP/reference | 0.93373 | 0.354 |
41DAP/reference | 1.10037 | 0.475 |
42DAP/reference | 1.05487 | 0.686 |
43DAP/reference | 1.03514 | 1 |
47DAP/reference | 1.06469 | 0.948 |
52DAP/reference | 0.95022 | 0.106 |
57DAP/reference | 1.0243 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37119 | 0.443 |
17DAP/reference | 1.52437 | 0.518 |
27DAP/reference | 0.55924 | 0.022 |
39DAP/reference | 0.64971 | |
41DAP/reference | 0.64776 | 0.073 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.64593 | 0.356 |
47DAP/reference | 0.62595 | 0.092 |
52DAP/reference | 0.62932 | |
57DAP/reference | 0.31845 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9286 | 0.039 |
17DAP/reference | 0.85727 | 0.305 |
27DAP/reference | 0.99985 | 0.843 |
39DAP/reference | 0.99698 | 0.643 |
41DAP/reference | 0.98338 | 0.682 |
42DAP/reference | 0.96367 | 0.552 |
43DAP/reference | 0.84417 | 0.071 |
47DAP/reference | 0.55049 | 0.034 |
52DAP/reference | 0.84557 | 0.284 |
57DAP/reference | 0.96641 | 0.753 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06006 | 1 |
26DAP/20DAP | 0.41702 | |
34DAP/26DAP | 0.33392 | |
51DAP/34DAP | 0.71544 | 0.286 |
52DAP/51DAP | 0.80937 | |
53DAP/52DAP | 1.70465 | |
55DAP/53DAP | 0.7383 | 0.698 |
57DAP/55DAP | 0.71862 | 0.36 |
62DAP/57DAP | 0.3447 | |
68DAP/62DAP | 2.34433 | |
68DAP/14DAP | 2.23716 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.66583 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.63962 | 0.247 |
IL2-6/WTpooled | 1.19656 | |
IL7-5/WTpooled | 0.82901 | |
IL7-3/WTpooled | 0.95482 | |
IL12-4/WTpooled | 1.00202 | 1 |
IL1-4/WTpooled | 0.97172 | 0.699 |
WT/WTpooled | 1.10865 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.90398 | 1 |
Manapal/WT (red) | N/A | N/A |
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