Expression of 1-1-3.3.3.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029850.839
27DAP/17DAP3.171980.752
39DAP/27DAP1.117041
41DAP/39DAP0.819470.465
42DAP/41DAP1.368441
43DAP/42DAP1.036520.937
47DAP/43DAP0.91020.609
52DAP/47DAP2.194720.249
57DAP/52DAP1.610640.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.726230.254
17DAP/reference0.684980.224
27DAP/reference0.66103
39DAP/reference0.71824
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference0.8337
47DAP/referenceN/AN/A
52DAP/reference0.9792
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.22363
27DAP/17DAP1.303760.842
39DAP/27DAP1.82615
41DAP/39DAP1.176521
42DAP/41DAP1.415920.635
43DAP/42DAP1.296470.585
47DAP/43DAPN/AN/A
52DAP/47DAP0.870030.801
57DAP/52DAP1.14593
57DAP/7DAP0.763011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.833330.138
17DAP/reference1.107240.574
27DAP/reference1.053220.804
39DAP/reference0.933730.354
41DAP/reference1.100370.475
42DAP/reference1.054870.686
43DAP/reference1.035141
47DAP/reference1.064690.948
52DAP/reference0.950220.106
57DAP/reference1.02431

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.371190.443
17DAP/reference1.524370.518
27DAP/reference0.559240.022
39DAP/reference0.64971
41DAP/reference0.647760.073
42DAP/referenceN/AN/A
43DAP/reference1.645930.356
47DAP/reference0.625950.092
52DAP/reference0.62932
57DAP/reference0.318450.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92860.039
17DAP/reference0.857270.305
27DAP/reference0.999850.843
39DAP/reference0.996980.643
41DAP/reference0.983380.682
42DAP/reference0.963670.552
43DAP/reference0.844170.071
47DAP/reference0.550490.034
52DAP/reference0.845570.284
57DAP/reference0.966410.753

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.060061
26DAP/20DAP0.41702
34DAP/26DAP0.33392
51DAP/34DAP0.715440.286
52DAP/51DAP0.80937
53DAP/52DAP1.70465
55DAP/53DAP0.73830.698
57DAP/55DAP0.718620.36
62DAP/57DAP0.3447
68DAP/62DAP2.34433
68DAP/14DAP2.23716

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.66583

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.639620.247
IL2-6/WTpooled1.19656
IL7-5/WTpooled0.82901
IL7-3/WTpooled0.95482
IL12-4/WTpooled1.002021
IL1-4/WTpooled0.971720.699
WT/WTpooled1.108650.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.903981
Manapal/WT (red)N/AN/A