Expression of 1-1-3.3.4.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00723 | 0.951 |
27DAP/17DAP | 1.10295 | 0.868 |
39DAP/27DAP | 0.80329 | 0.458 |
41DAP/39DAP | 1.34163 | 0.323 |
42DAP/41DAP | 1.12524 | 0.945 |
43DAP/42DAP | 0.91593 | 0.741 |
47DAP/43DAP | 0.95044 | 0.815 |
52DAP/47DAP | 1.03367 | 0.941 |
57DAP/52DAP | 0.97033 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99286 | 0.743 |
17DAP/reference | 1.02381 | 0.787 |
27DAP/reference | 1.14275 | 0.904 |
39DAP/reference | 0.74539 | 0.475 |
41DAP/reference | 0.81365 | 0.201 |
42DAP/reference | 0.97769 | 0.326 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.9814 | 0.418 |
52DAP/reference | 1.18557 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08618 | 0.508 |
27DAP/17DAP | 1.05047 | 0.848 |
39DAP/27DAP | 0.96841 | 0.721 |
41DAP/39DAP | 0.93333 | 0.567 |
42DAP/41DAP | 1.00779 | 1 |
43DAP/42DAP | 0.9809 | 0.665 |
47DAP/43DAP | 0.96565 | 0.666 |
52DAP/47DAP | 1.01453 | 0.945 |
57DAP/52DAP | 0.98148 | 0.716 |
57DAP/7DAP | 1.06252 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97852 | 0.402 |
17DAP/reference | 0.9751 | 0.064 |
27DAP/reference | 0.91121 | 0.024 |
39DAP/reference | 0.98954 | 0.474 |
41DAP/reference | 0.96555 | 0.079 |
42DAP/reference | 1.05264 | 0.1 |
43DAP/reference | 0.96716 | 0.064 |
47DAP/reference | 0.91896 | 0.057 |
52DAP/reference | 0.98855 | 0.398 |
57DAP/reference | 0.963 | 0.156 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88845 | 0.487 |
17DAP/reference | 1.03319 | 0.756 |
27DAP/reference | 1.027 | 0.888 |
39DAP/reference | 1.03867 | 0.67 |
41DAP/reference | 0.98275 | 0.531 |
42DAP/reference | 0.95587 | 0.289 |
43DAP/reference | 1.01026 | 0.919 |
47DAP/reference | 0.94584 | 0.129 |
52DAP/reference | 0.98642 | 0.537 |
57DAP/reference | 1.05775 | 0.177 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96806 | 0.052 |
17DAP/reference | 0.97804 | 0.499 |
27DAP/reference | 0.95548 | 0.155 |
39DAP/reference | 0.9701 | 0.179 |
41DAP/reference | 0.95689 | 0.237 |
42DAP/reference | 0.91199 | 0.087 |
43DAP/reference | 0.9505 | 0.171 |
47DAP/reference | 0.95441 | 0.215 |
52DAP/reference | 0.90168 | 0.166 |
57DAP/reference | 0.77166 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0244 | 0.966 |
26DAP/20DAP | 0.98264 | 1 |
34DAP/26DAP | 0.92493 | 0.565 |
51DAP/34DAP | 1.02139 | 0.883 |
52DAP/51DAP | 1.02799 | 0.733 |
53DAP/52DAP | 0.96343 | 0.824 |
55DAP/53DAP | 1.02104 | 1 |
57DAP/55DAP | 0.99551 | 0.944 |
62DAP/57DAP | 1.03759 | 0.902 |
68DAP/62DAP | 1.02912 | 0.926 |
68DAP/14DAP | 1.05819 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89 | 0.198 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.01757 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.40176 | 0.058 |
Immature Eggplant/Mature Eggplant | 0.7394 | |
Ripe Pepper/Ripe Tomato | 0.93937 | 1 |
Mature Eggplant/Ripe Tomato | 1.59447 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98966 | 0.961 |
1-1-2/M82 | 0.80988 | 0.804 |
12-2/M82 | 1.17683 | 0.519 |
12-4/M82 | 1.06278 | 1 |
1-3/M82 | 0.96751 | 1 |
2-1-1/M82 | 1.13276 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.95428 | 1 |
3-2/M82 | 1.04815 | |
4-1-1/M82 | 0.96413 | 1 |
4-1/M82 | 1.13468 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.8912 | 0.72 |
5-3/M82 | 1.08703 | 1 |
6-2/M82 | 0.97267 | 0.481 |
6-3/M82 | 0.85227 | |
7-1/M82 | 0.96217 | |
7-2/M82 | 0.99432 | 1 |
9-3-2/M82 | 0.66112 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.80641 | 0.321 |
IL2-6/WTpooled | 1.48551 | 0.531 |
IL7-5/WTpooled | 1.35898 | 0.792 |
IL7-3/WTpooled | 0.97471 | 1 |
IL12-4/WTpooled | 1.16217 | 0.673 |
IL1-4/WTpooled | 1.0494 | 1 |
WT/WTpooled | 0.94899 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85417 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07891 | 0.846 |
DC3000/delta hrp 6h | 1.09906 | 1 |
DC3000/delta hrp 12h | 1.07952 | 1 |
DC3000/delta hrp 24h | 1.0433 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.61738 | 0.028 |
DC3000 delta B/DC3000 delta AB | 0.82864 | 0.036 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89447 | 1 |
Exp 36h | 0.60766 | 0.41 |
Exp 60h | 0.49728 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.07403 | 1 |
Var 0h | 1.11148 | 0.936 |
Var 12h I row2-row1 | 0.8567 | |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 1.00662 | 1 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.9353 | 0.734 |
Time course 12hI-12hNI | 1.01963 | 0.818 |
Time course 36hI-36hNI | 1.15492 | 0.08 |
Time course 60hI-60hNI | 0.87888 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9244 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 1.01031 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9914 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01788 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.4143 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93458 | 1 |
Manapal/WT (break) | 1.41675 | 0.381 |
Manapal/WT (red) | 1.37608 | 0.164 |
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