Expression of 1-1-3.3.4.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.542350.014
27DAP/17DAP0.672620.149
39DAP/27DAP0.715650.522
41DAP/39DAP0.69350.132
42DAP/41DAP0.827770.774
43DAP/42DAP1.384310.252
47DAP/43DAP0.666250.121
52DAP/47DAP0.728010.247
57DAP/52DAP0.921890.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.262730.032
17DAP/reference1.083280.696
27DAP/reference1.048810.612
39DAP/reference0.823410.015
41DAP/reference0.89062
42DAP/reference0.855140.035
43DAP/referenceN/AN/A
47DAP/reference0.767780.002
52DAP/reference0.714720.139
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.775470.135
27DAP/17DAP0.902360.537
39DAP/27DAP0.837940.046
41DAP/39DAP0.728560.019
42DAP/41DAP1.037580.947
43DAP/42DAP1.059910.446
47DAP/43DAP0.899260.418
52DAP/47DAP0.927860.763
57DAP/52DAP0.932970.598
57DAP/7DAP0.589811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.711540.024
17DAP/reference1.210930.025
27DAP/reference0.906690.03
39DAP/reference0.926720.095
41DAP/reference0.782980.015
42DAP/reference0.825140.01
43DAP/reference0.93310.202
47DAP/reference0.778810.066
52DAP/reference0.757670.011
57DAP/reference0.946350.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.299150.172
17DAP/reference1.12520.278
27DAP/reference0.986970.642
39DAP/reference0.827120.031
41DAP/reference0.960470.268
42DAP/reference0.824320.055
43DAP/reference0.728830.024
47DAP/reference0.799540.026
52DAP/reference0.901120.143
57DAP/reference0.945060.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.643830.017
17DAP/reference1.348110.126
27DAP/reference1.137330.067
39DAP/reference1.015350.962
41DAP/reference0.965580.512
42DAP/reference0.911020.552
43DAP/reference0.974690.66
47DAP/reference0.708730.005
52DAP/reference0.619220.064
57DAP/reference0.734070.04

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.029861
26DAP/20DAP1.316980.312
34DAP/26DAP1.22280.304
51DAP/34DAP0.793470.098
52DAP/51DAP1.029120.836
53DAP/52DAP0.805520.27
55DAP/53DAP0.96550.746
57DAP/55DAP1.048820.881
62DAP/57DAP1.186870.833
68DAP/62DAP0.940930.769
68DAP/14DAP0.718270.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.310230.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.347480.058
Mature Green Tomato/Ripe Tomato15.58420.015
Immature Eggplant/Mature Eggplant0.271370.057
Ripe Pepper/Ripe Tomato16.340.256
Mature Eggplant/Ripe Tomato93.31660.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.205070.365
IL2-6/WTpooled1.276880.395
IL7-5/WTpooled1.337381
IL7-3/WTpooled0.71624
IL12-4/WTpooled1.240010.737
IL1-4/WTpooled0.889480.699
WT/WTpooled1.017831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.856990.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.081290.921
DC3000/delta hrp 6h1.001770.95
DC3000/delta hrp 12h1.226671
DC3000/delta hrp 24h0.342970.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.398790.023
DC3000 delta B/DC3000 delta AB0.422570.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.99371
Exp 36h0.763930.471
Exp 60h0.606430.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.097191
Var 0h1.192411
Var 12h I row2-row10.895730.31
Var 12h NI row2-row10.994731
Var 36h I row2-row10.835960.805
Var 36h NI row2-row11.178761
Var 60h I row2-row11.24044
Var 60h NI row2-row11.21660.904
Time course 0hI-0hNI1.058820.799
Time course 12hI-12hNI0.944780.581
Time course 36hI-36hNI0.880250.136
Time course 60hI-60hNI0.302950.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.822390.289
transgenic ySAMdc/azygous control (breaker)2.452720.248
transgenic ySAMdc/azygous control (red)1.043111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.859430.064

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.683750.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.746320.096
Manapal/WT (break)4.89320.183
Manapal/WT (red)1.715450.413