Expression of 1-1-3.3.4.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.284830.523
27DAP/17DAP0.999071
39DAP/27DAP1.264210.4
41DAP/39DAP0.828640.34
42DAP/41DAP0.982011
43DAP/42DAP1.051611
47DAP/43DAP1.050810.825
52DAP/47DAP1.043590.949
57DAP/52DAP1.060030.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.004110.824
17DAP/reference1.164870.178
27DAP/reference0.946470.428
39DAP/reference1.00770.903
41DAP/reference1.070460.034
42DAP/reference0.875030.02
43DAP/reference1.035590.705
47DAP/reference0.921270.055
52DAP/reference0.832570.121
57DAP/reference0.921960.277

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.997770.871
27DAP/17DAP1.110230.458
39DAP/27DAP1.040540.685
41DAP/39DAP0.974510.973
42DAP/41DAP1.038750.773
43DAP/42DAP0.884410.024
47DAP/43DAP1.060190.234
52DAP/47DAP0.998780.979
57DAP/52DAP0.965430.507
57DAP/7DAP1.069391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.909640.157
17DAP/reference0.892970.012
27DAP/reference0.878190.022
39DAP/reference0.932970.015
41DAP/reference0.877490.022
42DAP/reference0.915240.014
43DAP/reference0.89150.016
47DAP/reference0.971770.671
52DAP/reference0.84130.053
57DAP/reference0.852640.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.196390.041
17DAP/reference0.865830.253
27DAP/reference0.833080.058
39DAP/reference0.874540.122
41DAP/reference0.83990.118
42DAP/reference0.818970.013
43DAP/reference0.982060.657
47DAP/reference0.870020.017
52DAP/reference0.911450.031
57DAP/reference0.992950.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963030.119
17DAP/reference0.962660.499
27DAP/reference0.894830.038
39DAP/reference0.882810.026
41DAP/reference0.93060.019
42DAP/reference0.839970.032
43DAP/reference0.814870.073
47DAP/reference0.888270.066
52DAP/reference0.780330.073
57DAP/reference0.68380.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.93161
26DAP/20DAP1.780280.106
34DAP/26DAP0.895650.653
51DAP/34DAP1.244780.081
52DAP/51DAP0.845520.151
53DAP/52DAP1.079410.384
55DAP/53DAP0.971510.796
57DAP/55DAP1.096650.927
62DAP/57DAP1.225650.35
68DAP/62DAP0.974190.863
68DAP/14DAP1.1111

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.73020.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.385280.128
Mature Green Tomato/Ripe Tomato1.073320.299
Immature Eggplant/Mature Eggplant1.618650.058
Ripe Pepper/Ripe Tomato0.974931
Mature Eggplant/Ripe Tomato1.009561

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.969290.944
1-1-2/M820.986251
12-2/M820.940440.955
12-4/M821.094221
1-3/M820.937251
2-1-1/M821.198610.439
2-1/M82N/AN/A
2-6/M821.140860.594
3-2/M821.04360.967
4-1-1/M820.980361
4-1/M821.1574
4-3-2/M820.881421
4-3/M821.05089
5-3/M820.981071
6-2/M820.931051
6-3/M820.81003
7-1/M821.154061
7-2/M820.923490.796
9-3-2/M820.956851

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.941291
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.060191
IL12-4/WTpooled0.786650.478
IL1-4/WTpooled0.91903
WT/WTpooled1.015841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.068240.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993791
DC3000/delta hrp 6h1.144861
DC3000/delta hrp 12h1.104711
DC3000/delta hrp 24h1.182710.103

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.311370.042
DC3000 delta B/DC3000 delta AB1.130960.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.079341
Exp 36h1.558610.409
Exp 60h1.588150.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.059120.263
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.19574
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.908390.377
transgenic ySAMdc/azygous control (breaker)1.043731
transgenic ySAMdc/azygous control (red)0.940261

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.014220.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.84510.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.04251
Manapal/WT (break)0.907311
Manapal/WT (red)1.027321