Expression of 1-1-3.3.4.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28483 | 0.523 |
27DAP/17DAP | 0.99907 | 1 |
39DAP/27DAP | 1.26421 | 0.4 |
41DAP/39DAP | 0.82864 | 0.34 |
42DAP/41DAP | 0.98201 | 1 |
43DAP/42DAP | 1.05161 | 1 |
47DAP/43DAP | 1.05081 | 0.825 |
52DAP/47DAP | 1.04359 | 0.949 |
57DAP/52DAP | 1.06003 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00411 | 0.824 |
17DAP/reference | 1.16487 | 0.178 |
27DAP/reference | 0.94647 | 0.428 |
39DAP/reference | 1.0077 | 0.903 |
41DAP/reference | 1.07046 | 0.034 |
42DAP/reference | 0.87503 | 0.02 |
43DAP/reference | 1.03559 | 0.705 |
47DAP/reference | 0.92127 | 0.055 |
52DAP/reference | 0.83257 | 0.121 |
57DAP/reference | 0.92196 | 0.277 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99777 | 0.871 |
27DAP/17DAP | 1.11023 | 0.458 |
39DAP/27DAP | 1.04054 | 0.685 |
41DAP/39DAP | 0.97451 | 0.973 |
42DAP/41DAP | 1.03875 | 0.773 |
43DAP/42DAP | 0.88441 | 0.024 |
47DAP/43DAP | 1.06019 | 0.234 |
52DAP/47DAP | 0.99878 | 0.979 |
57DAP/52DAP | 0.96543 | 0.507 |
57DAP/7DAP | 1.06939 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90964 | 0.157 |
17DAP/reference | 0.89297 | 0.012 |
27DAP/reference | 0.87819 | 0.022 |
39DAP/reference | 0.93297 | 0.015 |
41DAP/reference | 0.87749 | 0.022 |
42DAP/reference | 0.91524 | 0.014 |
43DAP/reference | 0.8915 | 0.016 |
47DAP/reference | 0.97177 | 0.671 |
52DAP/reference | 0.8413 | 0.053 |
57DAP/reference | 0.85264 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19639 | 0.041 |
17DAP/reference | 0.86583 | 0.253 |
27DAP/reference | 0.83308 | 0.058 |
39DAP/reference | 0.87454 | 0.122 |
41DAP/reference | 0.8399 | 0.118 |
42DAP/reference | 0.81897 | 0.013 |
43DAP/reference | 0.98206 | 0.657 |
47DAP/reference | 0.87002 | 0.017 |
52DAP/reference | 0.91145 | 0.031 |
57DAP/reference | 0.99295 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96303 | 0.119 |
17DAP/reference | 0.96266 | 0.499 |
27DAP/reference | 0.89483 | 0.038 |
39DAP/reference | 0.88281 | 0.026 |
41DAP/reference | 0.9306 | 0.019 |
42DAP/reference | 0.83997 | 0.032 |
43DAP/reference | 0.81487 | 0.073 |
47DAP/reference | 0.88827 | 0.066 |
52DAP/reference | 0.78033 | 0.073 |
57DAP/reference | 0.6838 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9316 | 1 |
26DAP/20DAP | 1.78028 | 0.106 |
34DAP/26DAP | 0.89565 | 0.653 |
51DAP/34DAP | 1.24478 | 0.081 |
52DAP/51DAP | 0.84552 | 0.151 |
53DAP/52DAP | 1.07941 | 0.384 |
55DAP/53DAP | 0.97151 | 0.796 |
57DAP/55DAP | 1.09665 | 0.927 |
62DAP/57DAP | 1.22565 | 0.35 |
68DAP/62DAP | 0.97419 | 0.863 |
68DAP/14DAP | 1.111 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.7302 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.38528 | 0.128 |
Mature Green Tomato/Ripe Tomato | 1.07332 | 0.299 |
Immature Eggplant/Mature Eggplant | 1.61865 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.97493 | 1 |
Mature Eggplant/Ripe Tomato | 1.00956 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96929 | 0.944 |
1-1-2/M82 | 0.98625 | 1 |
12-2/M82 | 0.94044 | 0.955 |
12-4/M82 | 1.09422 | 1 |
1-3/M82 | 0.93725 | 1 |
2-1-1/M82 | 1.19861 | 0.439 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.14086 | 0.594 |
3-2/M82 | 1.0436 | 0.967 |
4-1-1/M82 | 0.98036 | 1 |
4-1/M82 | 1.1574 | |
4-3-2/M82 | 0.88142 | 1 |
4-3/M82 | 1.05089 | |
5-3/M82 | 0.98107 | 1 |
6-2/M82 | 0.93105 | 1 |
6-3/M82 | 0.81003 | |
7-1/M82 | 1.15406 | 1 |
7-2/M82 | 0.92349 | 0.796 |
9-3-2/M82 | 0.95685 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94129 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06019 | 1 |
IL12-4/WTpooled | 0.78665 | 0.478 |
IL1-4/WTpooled | 0.91903 | |
WT/WTpooled | 1.01584 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06824 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99379 | 1 |
DC3000/delta hrp 6h | 1.14486 | 1 |
DC3000/delta hrp 12h | 1.10471 | 1 |
DC3000/delta hrp 24h | 1.18271 | 0.103 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.31137 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.13096 | 0.288 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07934 | 1 |
Exp 36h | 1.55861 | 0.409 |
Exp 60h | 1.58815 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.05912 | 0.263 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 0.19574 | |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90839 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 1.04373 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94026 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01422 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8451 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0425 | 1 |
Manapal/WT (break) | 0.90731 | 1 |
Manapal/WT (red) | 1.02732 | 1 |
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