Expression of 1-1-3.3.6.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09249 | 0.656 |
27DAP/17DAP | 0.85094 | 0.611 |
39DAP/27DAP | 1.07739 | 0.906 |
41DAP/39DAP | 0.88277 | 0.533 |
42DAP/41DAP | 1.23795 | 0.681 |
43DAP/42DAP | 0.99364 | 0.937 |
47DAP/43DAP | 1.10174 | 0.889 |
52DAP/47DAP | 1.21201 | 0.593 |
57DAP/52DAP | 1.20128 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01639 | 0.661 |
17DAP/reference | 1.16066 | 0.384 |
27DAP/reference | 2.09894 | 0.007 |
39DAP/reference | 1.57316 | 0.041 |
41DAP/reference | 1.42195 | 0.017 |
42DAP/reference | 1.46687 | 0.001 |
43DAP/reference | 1.4897 | 0.015 |
47DAP/reference | 2.44122 | 0.001 |
52DAP/reference | 2.29448 | 0.007 |
57DAP/reference | 2.56126 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94959 | 0.56 |
27DAP/17DAP | 1.00255 | 1 |
39DAP/27DAP | 1.05231 | 0.57 |
41DAP/39DAP | 0.96592 | 0.893 |
42DAP/41DAP | 1.08184 | 0.651 |
43DAP/42DAP | 1.00751 | 0.83 |
47DAP/43DAP | 0.97159 | 0.857 |
52DAP/47DAP | 1.04794 | 0.816 |
57DAP/52DAP | 0.95692 | 0.603 |
57DAP/7DAP | 0.98752 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06565 | 0.564 |
17DAP/reference | 0.96795 | 0.389 |
27DAP/reference | 0.88528 | 0.024 |
39DAP/reference | 0.93159 | 0.264 |
41DAP/reference | 1.03825 | 1 |
42DAP/reference | 0.9743 | 0.506 |
43DAP/reference | 1.0022 | 0.665 |
47DAP/reference | 1.67293 | 0.042 |
52DAP/reference | 1.01281 | 1 |
57DAP/reference | 1.00022 | 0.67 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7062 | 0.025 |
17DAP/reference | 1.18674 | 0.223 |
27DAP/reference | 1.49343 | 0.102 |
39DAP/reference | 1.4871 | 0.011 |
41DAP/reference | 1.21747 | 0.055 |
42DAP/reference | 1.73799 | 0.007 |
43DAP/reference | 1.03916 | 0.706 |
47DAP/reference | 1.60513 | 0.008 |
52DAP/reference | 1.26032 | 0.012 |
57DAP/reference | 0.85056 | 0.156 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07693 | 0.691 |
17DAP/reference | 0.90409 | 0.348 |
27DAP/reference | 1.22259 | 0.044 |
39DAP/reference | 1.05171 | 0.836 |
41DAP/reference | 0.92537 | 0.209 |
42DAP/reference | 1.08894 | 0.576 |
43DAP/reference | 1.13437 | 0.531 |
47DAP/reference | 1.40901 | 0.046 |
52DAP/reference | 1.37868 | 0.194 |
57DAP/reference | 4.58891 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15109 | 0.966 |
26DAP/20DAP | 0.99601 | 1 |
34DAP/26DAP | 1.03198 | 1 |
51DAP/34DAP | 1.01486 | 0.993 |
52DAP/51DAP | 1.01568 | 0.915 |
53DAP/52DAP | 0.90156 | 0.365 |
55DAP/53DAP | 0.95905 | 0.761 |
57DAP/55DAP | 1.27878 | 0.71 |
62DAP/57DAP | 0.71147 | 0.681 |
68DAP/62DAP | 1.50554 | 0.028 |
68DAP/14DAP | 4.85867 | 0.029 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8021 | 0.048 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21239 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.20506 | 0.399 |
Immature Eggplant/Mature Eggplant | 0.97687 | 0.808 |
Ripe Pepper/Ripe Tomato | 0.90971 | 1 |
Mature Eggplant/Ripe Tomato | 0.84785 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0286 | 1 |
1-1-2/M82 | 1.00788 | 1 |
12-2/M82 | 1.19757 | |
12-4/M82 | 0.98765 | 1 |
1-3/M82 | 1.0607 | 1 |
2-1-1/M82 | 0.90791 | 0.784 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11769 | 0.695 |
3-2/M82 | 1.37394 | |
4-1-1/M82 | 0.83886 | 0.962 |
4-1/M82 | 1.09127 | |
4-3-2/M82 | 1.25945 | |
4-3/M82 | 1.09045 | 1 |
5-3/M82 | 1.07201 | 1 |
6-2/M82 | 0.9818 | |
6-3/M82 | 0.97581 | 1 |
7-1/M82 | 0.91945 | |
7-2/M82 | 0.97902 | 1 |
9-3-2/M82 | 1.19006 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75078 | |
IL2-6/WTpooled | 0.96101 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.00604 | 1 |
IL12-4/WTpooled | 0.95789 | 1 |
IL1-4/WTpooled | 1.09255 | |
WT/WTpooled | 1.09396 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01668 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01062 | 0.921 |
DC3000/delta hrp 6h | 1.05219 | 0.95 |
DC3000/delta hrp 12h | 0.98181 | 1 |
DC3000/delta hrp 24h | 1.10804 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.20097 | 0.313 |
DC3000 delta B/DC3000 delta AB | 0.99189 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.25634 | 1 |
Exp 36h | 1.3016 | 0.489 |
Exp 60h | 1.34456 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99579 | 1 |
Var 0h | 0.87941 | 0.933 |
Var 12h I row2-row1 | 1.05534 | 0.654 |
Var 12h NI row2-row1 | 1.03805 | 1 |
Var 36h I row2-row1 | 1.07698 | 1 |
Var 36h NI row2-row1 | 1.19246 | 1 |
Var 60h I row2-row1 | 0.99533 | 1 |
Var 60h NI row2-row1 | 1.04761 | 0.904 |
Time course 0hI-0hNI | 0.99832 | 1 |
Time course 12hI-12hNI | 1.05621 | 0.684 |
Time course 36hI-36hNI | 0.90546 | 0.183 |
Time course 60hI-60hNI | 1.00687 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99089 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.07647 | 1 |
transgenic ySAMdc/azygous control (red) | 0.81644 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.7316 | 0.041 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82752 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.57753 | 0.172 |
Manapal/WT (break) | 0.83846 | 1 |
Manapal/WT (red) | 1.01429 | 1 |
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