Expression of 1-1-3.3.6.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.092490.656
27DAP/17DAP0.850940.611
39DAP/27DAP1.077390.906
41DAP/39DAP0.882770.533
42DAP/41DAP1.237950.681
43DAP/42DAP0.993640.937
47DAP/43DAP1.101740.889
52DAP/47DAP1.212010.593
57DAP/52DAP1.201280.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.016390.661
17DAP/reference1.160660.384
27DAP/reference2.098940.007
39DAP/reference1.573160.041
41DAP/reference1.421950.017
42DAP/reference1.466870.001
43DAP/reference1.48970.015
47DAP/reference2.441220.001
52DAP/reference2.294480.007
57DAP/reference2.561260.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949590.56
27DAP/17DAP1.002551
39DAP/27DAP1.052310.57
41DAP/39DAP0.965920.893
42DAP/41DAP1.081840.651
43DAP/42DAP1.007510.83
47DAP/43DAP0.971590.857
52DAP/47DAP1.047940.816
57DAP/52DAP0.956920.603
57DAP/7DAP0.987521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.065650.564
17DAP/reference0.967950.389
27DAP/reference0.885280.024
39DAP/reference0.931590.264
41DAP/reference1.038251
42DAP/reference0.97430.506
43DAP/reference1.00220.665
47DAP/reference1.672930.042
52DAP/reference1.012811
57DAP/reference1.000220.67

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.70620.025
17DAP/reference1.186740.223
27DAP/reference1.493430.102
39DAP/reference1.48710.011
41DAP/reference1.217470.055
42DAP/reference1.737990.007
43DAP/reference1.039160.706
47DAP/reference1.605130.008
52DAP/reference1.260320.012
57DAP/reference0.850560.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076930.691
17DAP/reference0.904090.348
27DAP/reference1.222590.044
39DAP/reference1.051710.836
41DAP/reference0.925370.209
42DAP/reference1.088940.576
43DAP/reference1.134370.531
47DAP/reference1.409010.046
52DAP/reference1.378680.194
57DAP/reference4.588910.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.151090.966
26DAP/20DAP0.996011
34DAP/26DAP1.031981
51DAP/34DAP1.014860.993
52DAP/51DAP1.015680.915
53DAP/52DAP0.901560.365
55DAP/53DAP0.959050.761
57DAP/55DAP1.278780.71
62DAP/57DAP0.711470.681
68DAP/62DAP1.505540.028
68DAP/14DAP4.858670.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.80210.048

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.212390.068
Mature Green Tomato/Ripe Tomato1.205060.399
Immature Eggplant/Mature Eggplant0.976870.808
Ripe Pepper/Ripe Tomato0.909711
Mature Eggplant/Ripe Tomato0.847851

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.02861
1-1-2/M821.007881
12-2/M821.19757
12-4/M820.987651
1-3/M821.06071
2-1-1/M820.907910.784
2-1/M82N/AN/A
2-6/M821.117690.695
3-2/M821.37394
4-1-1/M820.838860.962
4-1/M821.09127
4-3-2/M821.25945
4-3/M821.090451
5-3/M821.072011
6-2/M820.9818
6-3/M820.975811
7-1/M820.91945
7-2/M820.979021
9-3-2/M821.19006

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.75078
IL2-6/WTpooled0.961011
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.006041
IL12-4/WTpooled0.957891
IL1-4/WTpooled1.09255
WT/WTpooled1.093961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.016681

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.010620.921
DC3000/delta hrp 6h1.052190.95
DC3000/delta hrp 12h0.981811
DC3000/delta hrp 24h1.108040.347

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.200970.313
DC3000 delta B/DC3000 delta AB0.991891

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.256341
Exp 36h1.30160.489
Exp 60h1.344560.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995791
Var 0h0.879410.933
Var 12h I row2-row11.055340.654
Var 12h NI row2-row11.038051
Var 36h I row2-row11.076981
Var 36h NI row2-row11.192461
Var 60h I row2-row10.995331
Var 60h NI row2-row11.047610.904
Time course 0hI-0hNI0.998321
Time course 12hI-12hNI1.056210.684
Time course 36hI-36hNI0.905460.183
Time course 60hI-60hNI1.006871

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.990890.862
transgenic ySAMdc/azygous control (breaker)1.076471
transgenic ySAMdc/azygous control (red)0.816441

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.73160.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.827520.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.577530.172
Manapal/WT (break)0.838461
Manapal/WT (red)1.014291