Expression of 1-1-3.3.6.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84054 | 0.211 |
27DAP/17DAP | 0.88877 | 0.73 |
39DAP/27DAP | 1.0841 | 1 |
41DAP/39DAP | 0.99726 | 0.789 |
42DAP/41DAP | 1.0512 | 1 |
43DAP/42DAP | 1.18582 | 0.993 |
47DAP/43DAP | 1.01729 | 0.979 |
52DAP/47DAP | 1.01442 | 0.837 |
57DAP/52DAP | 0.96112 | 0.869 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89716 | 0.149 |
17DAP/reference | 0.98254 | 0.701 |
27DAP/reference | 1.04115 | 0.721 |
39DAP/reference | 1.09283 | 0.191 |
41DAP/reference | 1.14713 | 0.102 |
42DAP/reference | 0.96742 | 0.268 |
43DAP/reference | 1.00335 | 0.904 |
47DAP/reference | 0.91564 | 0.055 |
52DAP/reference | 0.93037 | 0.244 |
57DAP/reference | 1.05172 | 0.355 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.4869 | 0.062 |
27DAP/17DAP | 0.93739 | 0.878 |
39DAP/27DAP | 0.89877 | 0.579 |
41DAP/39DAP | 0.99042 | 1 |
42DAP/41DAP | 1.32004 | 0.675 |
43DAP/42DAP | 1.35248 | 0.045 |
47DAP/43DAP | 0.70214 | 0.012 |
52DAP/47DAP | 1.03261 | 0.9 |
57DAP/52DAP | 1.14134 | 0.798 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1725 | 0.197 |
17DAP/reference | 0.93231 | 0.295 |
27DAP/reference | 1.04141 | 0.371 |
39DAP/reference | 1.14984 | 0.411 |
41DAP/reference | 1.23284 | 0.184 |
42DAP/reference | 1.05665 | 0.889 |
43DAP/reference | 0.89412 | 0.086 |
47DAP/reference | 1.03074 | 1 |
52DAP/reference | 1.15223 | 0.13 |
57DAP/reference | 1.151 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04286 | 0.62 |
17DAP/reference | 1.0392 | 0.739 |
27DAP/reference | 0.96231 | 0.501 |
39DAP/reference | 0.9738 | 0.497 |
41DAP/reference | 1.13844 | 0.629 |
42DAP/reference | 1.00157 | 1 |
43DAP/reference | 1.12984 | 0.532 |
47DAP/reference | 1.18503 | 0.029 |
52DAP/reference | 1.22389 | 0.036 |
57DAP/reference | 1.16842 | 0.172 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01685 | 1 |
17DAP/reference | 0.97499 | 0.647 |
27DAP/reference | 1.19911 | 0.357 |
39DAP/reference | 0.99749 | 0.755 |
41DAP/reference | 1.3469 | 0.213 |
42DAP/reference | 1.12458 | 0.589 |
43DAP/reference | 0.89235 | 0.246 |
47DAP/reference | 1.11314 | 0.14 |
52DAP/reference | 0.84907 | 0.163 |
57DAP/reference | 1.04469 | 0.878 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1417 | 0.966 |
26DAP/20DAP | 0.91646 | 1 |
34DAP/26DAP | 1.01732 | 1 |
51DAP/34DAP | 0.99669 | 0.946 |
52DAP/51DAP | 1.04313 | 0.842 |
53DAP/52DAP | 0.67786 | 0.235 |
55DAP/53DAP | 0.77404 | 0.273 |
57DAP/55DAP | 1.01241 | 1 |
62DAP/57DAP | 1.02565 | 0.902 |
68DAP/62DAP | 0.92568 | 0.7 |
68DAP/14DAP | 0.80987 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.631 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14663 | 1 |
Mature Green Tomato/Ripe Tomato | 0.95472 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.4493 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.42436 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.83075 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.83668 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.50602 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.83604 | 0.71 |
IL1-4/WTpooled | 1.15729 | 1 |
WT/WTpooled | 0.91699 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01705 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08294 | 0.914 |
DC3000/delta hrp 6h | 0.91917 | 0.95 |
DC3000/delta hrp 12h | 1.03151 | 1 |
DC3000/delta hrp 24h | 0.75511 | 0.1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81988 | 0.245 |
Exp 36h | 1.38649 | 0.693 |
Exp 60h | 1.14838 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.91612 | 1 |
Var 0h | 0.95298 | 1 |
Var 12h I row2-row1 | 0.84915 | 0.627 |
Var 12h NI row2-row1 | 0.91475 | 0.713 |
Var 36h I row2-row1 | 0.90083 | 1 |
Var 36h NI row2-row1 | 1.77512 | 1 |
Var 60h I row2-row1 | 0.91407 | 0.952 |
Var 60h NI row2-row1 | 1.11851 | 1 |
Time course 0hI-0hNI | 0.864 | 0.438 |
Time course 12hI-12hNI | 1.03396 | 0.914 |
Time course 36hI-36hNI | 0.85233 | 0.206 |
Time course 60hI-60hNI | 0.8348 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87569 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 1.11951 | 1 |
transgenic ySAMdc/azygous control (red) | 1.40366 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99075 | 0.651 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01388 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99076 | 1 |
Manapal/WT (break) | 0.92662 | 1 |
Manapal/WT (red) | 1.29957 | 1 |
|
|