Expression of 1-1-3.3.6.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.840540.211
27DAP/17DAP0.888770.73
39DAP/27DAP1.08411
41DAP/39DAP0.997260.789
42DAP/41DAP1.05121
43DAP/42DAP1.185820.993
47DAP/43DAP1.017290.979
52DAP/47DAP1.014420.837
57DAP/52DAP0.961120.869

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.897160.149
17DAP/reference0.982540.701
27DAP/reference1.041150.721
39DAP/reference1.092830.191
41DAP/reference1.147130.102
42DAP/reference0.967420.268
43DAP/reference1.003350.904
47DAP/reference0.915640.055
52DAP/reference0.930370.244
57DAP/reference1.051720.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.48690.062
27DAP/17DAP0.937390.878
39DAP/27DAP0.898770.579
41DAP/39DAP0.990421
42DAP/41DAP1.320040.675
43DAP/42DAP1.352480.045
47DAP/43DAP0.702140.012
52DAP/47DAP1.032610.9
57DAP/52DAP1.141340.798
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.17250.197
17DAP/reference0.932310.295
27DAP/reference1.041410.371
39DAP/reference1.149840.411
41DAP/reference1.232840.184
42DAP/reference1.056650.889
43DAP/reference0.894120.086
47DAP/reference1.030741
52DAP/reference1.152230.13
57DAP/reference1.1510.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042860.62
17DAP/reference1.03920.739
27DAP/reference0.962310.501
39DAP/reference0.97380.497
41DAP/reference1.138440.629
42DAP/reference1.001571
43DAP/reference1.129840.532
47DAP/reference1.185030.029
52DAP/reference1.223890.036
57DAP/reference1.168420.172

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016851
17DAP/reference0.974990.647
27DAP/reference1.199110.357
39DAP/reference0.997490.755
41DAP/reference1.34690.213
42DAP/reference1.124580.589
43DAP/reference0.892350.246
47DAP/reference1.113140.14
52DAP/reference0.849070.163
57DAP/reference1.044690.878

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.14170.966
26DAP/20DAP0.916461
34DAP/26DAP1.017321
51DAP/34DAP0.996690.946
52DAP/51DAP1.043130.842
53DAP/52DAP0.677860.235
55DAP/53DAP0.774040.273
57DAP/55DAP1.012411
62DAP/57DAP1.025650.902
68DAP/62DAP0.925680.7
68DAP/14DAP0.809870.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.6310.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.146631
Mature Green Tomato/Ripe Tomato0.954720.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.4493
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.42436
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.83075
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.83668
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.50602
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.836040.71
IL1-4/WTpooled1.157291
WT/WTpooled0.916991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.01705

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.082940.914
DC3000/delta hrp 6h0.919170.95
DC3000/delta hrp 12h1.031511
DC3000/delta hrp 24h0.755110.1

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.819880.245
Exp 36h1.386490.693
Exp 60h1.148380.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.916121
Var 0h0.952981
Var 12h I row2-row10.849150.627
Var 12h NI row2-row10.914750.713
Var 36h I row2-row10.900831
Var 36h NI row2-row11.775121
Var 60h I row2-row10.914070.952
Var 60h NI row2-row11.118511
Time course 0hI-0hNI0.8640.438
Time course 12hI-12hNI1.033960.914
Time course 36hI-36hNI0.852330.206
Time course 60hI-60hNI0.83480.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.875690.286
transgenic ySAMdc/azygous control (breaker)1.119511
transgenic ySAMdc/azygous control (red)1.403660.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990750.651

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.013881

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.990761
Manapal/WT (break)0.926621
Manapal/WT (red)1.299571