Expression of 1-1-3.3.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.403690.498
27DAP/17DAP0.997510.882
39DAP/27DAP1.031120.899
41DAP/39DAP0.955510.811
42DAP/41DAP0.944571
43DAP/42DAP0.929180.801
47DAP/43DAP1.111920.463
52DAP/47DAP0.904590.698
57DAP/52DAP1.135240.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.989920.707
17DAP/reference1.013680.565
27DAP/reference0.978470.359
39DAP/reference1.037310.691
41DAP/reference0.972090.267
42DAP/reference0.914140.005
43DAP/reference0.961240.429
47DAP/reference0.944420.106
52DAP/reference0.907420.258
57DAP/reference0.938410.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.32430.312
27DAP/17DAP1.047430.957
39DAP/27DAP1.082180.751
41DAP/39DAP0.902370.696
42DAP/41DAP1.005720.876
43DAP/42DAP0.833730.034
47DAP/43DAP1.04830.948
52DAP/47DAP1.130250.624
57DAP/52DAP1.044070.874
57DAP/7DAP1.144821

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.964360.613
17DAP/reference1.035711
27DAP/reference0.947210.348
39DAP/reference1.218360.175
41DAP/reference1.005750.811
42DAP/reference1.200720.233
43DAP/reference1.32820.009
47DAP/reference0.975060.671
52DAP/reference1.004240.621
57DAP/reference1.18630.1

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931160.518
17DAP/reference0.962560.434
27DAP/reference1.063660.834
39DAP/reference0.981110.497
41DAP/reference0.960890.403
42DAP/reference0.959780.237
43DAP/reference1.028570.751
47DAP/reference0.947420.05
52DAP/reference0.991440.619
57DAP/reference0.999760.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.093990.224
17DAP/reference0.975680.624
27DAP/reference0.954350.397
39DAP/reference1.066570.318
41DAP/reference1.238260.104
42DAP/reference1.019211
43DAP/reference1.250770.381
47DAP/reference0.977180.478
52DAP/reference1.153240.592
57DAP/reference0.867370.122

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.938580.841
26DAP/20DAP1.501780.19
34DAP/26DAP0.908320.771
51DAP/34DAP1.389680.072
52DAP/51DAP0.870991
53DAP/52DAP1.031911
55DAP/53DAP0.731950.072
57DAP/55DAP1.157040.779
62DAP/57DAP0.987080.994
68DAP/62DAP0.997920.914
68DAP/14DAP1.148840.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.677410.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.849990.318
Mature Green Tomato/Ripe Tomato1.584160.077
Immature Eggplant/Mature Eggplant1.279240.078
Ripe Pepper/Ripe Tomato1.642551
Mature Eggplant/Ripe Tomato2.322891

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.05541
1-1-2/M820.98515
12-2/M82N/AN/A
12-4/M820.821950.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M820.7369
2-6/M820.8413
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.17192
4-3/M821.765361
5-3/M820.977051
6-2/M821.2828
6-3/M820.932571
7-1/M821.08363
7-2/M820.93018
9-3-2/M820.81497

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.959641
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.892821
IL12-4/WTpooled0.924330.539
IL1-4/WTpooled0.890990.457
WT/WTpooled1.01751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.992171

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.052830.914
DC3000/delta hrp 6h0.969580.95
DC3000/delta hrp 12h1.062331
DC3000/delta hrp 24h0.830340.067

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.197920.384
DC3000 delta B/DC3000 delta AB1.130730.321

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.893161
Exp 36h1.270890.693
Exp 60h1.090870.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042771
Var 0h1.062560.782
Var 12h I row2-row11.095180.506
Var 12h NI row2-row11.20121
Var 36h I row2-row10.828651
Var 36h NI row2-row11.241880.482
Var 60h I row2-row10.7050.287
Var 60h NI row2-row11.155470.904
Time course 0hI-0hNI1.004161
Time course 12hI-12hNI1.028940.762
Time course 36hI-36hNI1.003860.73
Time course 60hI-60hNI0.764620.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.339290.221
transgenic ySAMdc/azygous control (breaker)1.011141
transgenic ySAMdc/azygous control (red)0.922461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998220.858

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.951090.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.779710.172
Manapal/WT (break)0.646890.299
Manapal/WT (red)1.110131