Expression of 1-1-3.3.6.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40369 | 0.498 |
27DAP/17DAP | 0.99751 | 0.882 |
39DAP/27DAP | 1.03112 | 0.899 |
41DAP/39DAP | 0.95551 | 0.811 |
42DAP/41DAP | 0.94457 | 1 |
43DAP/42DAP | 0.92918 | 0.801 |
47DAP/43DAP | 1.11192 | 0.463 |
52DAP/47DAP | 0.90459 | 0.698 |
57DAP/52DAP | 1.13524 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98992 | 0.707 |
17DAP/reference | 1.01368 | 0.565 |
27DAP/reference | 0.97847 | 0.359 |
39DAP/reference | 1.03731 | 0.691 |
41DAP/reference | 0.97209 | 0.267 |
42DAP/reference | 0.91414 | 0.005 |
43DAP/reference | 0.96124 | 0.429 |
47DAP/reference | 0.94442 | 0.106 |
52DAP/reference | 0.90742 | 0.258 |
57DAP/reference | 0.93841 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3243 | 0.312 |
27DAP/17DAP | 1.04743 | 0.957 |
39DAP/27DAP | 1.08218 | 0.751 |
41DAP/39DAP | 0.90237 | 0.696 |
42DAP/41DAP | 1.00572 | 0.876 |
43DAP/42DAP | 0.83373 | 0.034 |
47DAP/43DAP | 1.0483 | 0.948 |
52DAP/47DAP | 1.13025 | 0.624 |
57DAP/52DAP | 1.04407 | 0.874 |
57DAP/7DAP | 1.14482 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96436 | 0.613 |
17DAP/reference | 1.03571 | 1 |
27DAP/reference | 0.94721 | 0.348 |
39DAP/reference | 1.21836 | 0.175 |
41DAP/reference | 1.00575 | 0.811 |
42DAP/reference | 1.20072 | 0.233 |
43DAP/reference | 1.3282 | 0.009 |
47DAP/reference | 0.97506 | 0.671 |
52DAP/reference | 1.00424 | 0.621 |
57DAP/reference | 1.1863 | 0.1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93116 | 0.518 |
17DAP/reference | 0.96256 | 0.434 |
27DAP/reference | 1.06366 | 0.834 |
39DAP/reference | 0.98111 | 0.497 |
41DAP/reference | 0.96089 | 0.403 |
42DAP/reference | 0.95978 | 0.237 |
43DAP/reference | 1.02857 | 0.751 |
47DAP/reference | 0.94742 | 0.05 |
52DAP/reference | 0.99144 | 0.619 |
57DAP/reference | 0.99976 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09399 | 0.224 |
17DAP/reference | 0.97568 | 0.624 |
27DAP/reference | 0.95435 | 0.397 |
39DAP/reference | 1.06657 | 0.318 |
41DAP/reference | 1.23826 | 0.104 |
42DAP/reference | 1.01921 | 1 |
43DAP/reference | 1.25077 | 0.381 |
47DAP/reference | 0.97718 | 0.478 |
52DAP/reference | 1.15324 | 0.592 |
57DAP/reference | 0.86737 | 0.122 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93858 | 0.841 |
26DAP/20DAP | 1.50178 | 0.19 |
34DAP/26DAP | 0.90832 | 0.771 |
51DAP/34DAP | 1.38968 | 0.072 |
52DAP/51DAP | 0.87099 | 1 |
53DAP/52DAP | 1.03191 | 1 |
55DAP/53DAP | 0.73195 | 0.072 |
57DAP/55DAP | 1.15704 | 0.779 |
62DAP/57DAP | 0.98708 | 0.994 |
68DAP/62DAP | 0.99792 | 0.914 |
68DAP/14DAP | 1.14884 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.67741 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84999 | 0.318 |
Mature Green Tomato/Ripe Tomato | 1.58416 | 0.077 |
Immature Eggplant/Mature Eggplant | 1.27924 | 0.078 |
Ripe Pepper/Ripe Tomato | 1.64255 | 1 |
Mature Eggplant/Ripe Tomato | 2.32289 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05541 | |
1-1-2/M82 | 0.98515 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.82195 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.7369 | |
2-6/M82 | 0.8413 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.17192 | |
4-3/M82 | 1.76536 | 1 |
5-3/M82 | 0.97705 | 1 |
6-2/M82 | 1.2828 | |
6-3/M82 | 0.93257 | 1 |
7-1/M82 | 1.08363 | |
7-2/M82 | 0.93018 | |
9-3-2/M82 | 0.81497 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.95964 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.89282 | 1 |
IL12-4/WTpooled | 0.92433 | 0.539 |
IL1-4/WTpooled | 0.89099 | 0.457 |
WT/WTpooled | 1.0175 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99217 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05283 | 0.914 |
DC3000/delta hrp 6h | 0.96958 | 0.95 |
DC3000/delta hrp 12h | 1.06233 | 1 |
DC3000/delta hrp 24h | 0.83034 | 0.067 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19792 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.13073 | 0.321 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89316 | 1 |
Exp 36h | 1.27089 | 0.693 |
Exp 60h | 1.09087 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04277 | 1 |
Var 0h | 1.06256 | 0.782 |
Var 12h I row2-row1 | 1.09518 | 0.506 |
Var 12h NI row2-row1 | 1.2012 | 1 |
Var 36h I row2-row1 | 0.82865 | 1 |
Var 36h NI row2-row1 | 1.24188 | 0.482 |
Var 60h I row2-row1 | 0.705 | 0.287 |
Var 60h NI row2-row1 | 1.15547 | 0.904 |
Time course 0hI-0hNI | 1.00416 | 1 |
Time course 12hI-12hNI | 1.02894 | 0.762 |
Time course 36hI-36hNI | 1.00386 | 0.73 |
Time course 60hI-60hNI | 0.76462 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.33929 | 0.221 |
transgenic ySAMdc/azygous control (breaker) | 1.01114 | 1 |
transgenic ySAMdc/azygous control (red) | 0.92246 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99822 | 0.858 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95109 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77971 | 0.172 |
Manapal/WT (break) | 0.64689 | 0.299 |
Manapal/WT (red) | 1.11013 | 1 |
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