Expression of 1-1-3.3.6.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.74495 | 0.183 |
27DAP/17DAP | 1.0675 | 0.883 |
39DAP/27DAP | 1.47977 | 0.296 |
41DAP/39DAP | 0.55963 | 0.045 |
42DAP/41DAP | 1.2214 | 0.926 |
43DAP/42DAP | 1.14652 | 0.94 |
47DAP/43DAP | 1.19643 | 0.633 |
52DAP/47DAP | 1.10241 | 0.869 |
57DAP/52DAP | 1.81059 | 0.794 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04995 | 0.522 |
17DAP/reference | 1.12302 | 0.055 |
27DAP/reference | 1.08987 | 0.098 |
39DAP/reference | 1.11339 | 0.359 |
41DAP/reference | 1.0228 | 0.759 |
42DAP/reference | 0.93737 | 0.163 |
43DAP/reference | 1.01726 | 0.838 |
47DAP/reference | 1.06985 | 0.524 |
52DAP/reference | 1.03625 | 0.766 |
57DAP/reference | 0.86763 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28192 | 0.247 |
27DAP/17DAP | 1.29627 | 0.383 |
39DAP/27DAP | 1.19828 | 0.623 |
41DAP/39DAP | 0.99129 | 0.959 |
42DAP/41DAP | 1.06617 | 1 |
43DAP/42DAP | 0.71389 | 0.036 |
47DAP/43DAP | 1.06973 | 0.853 |
52DAP/47DAP | 1.24916 | 0.463 |
57DAP/52DAP | 1.24116 | 0.282 |
57DAP/7DAP | 1.35463 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41676 | 0.035 |
17DAP/reference | 1.55579 | 0.016 |
27DAP/reference | 1.53308 | 0.023 |
39DAP/reference | 1.62253 | 0.006 |
41DAP/reference | 1.52987 | 0.01 |
42DAP/reference | 1.44251 | 0.012 |
43DAP/reference | 1.39713 | 0.016 |
47DAP/reference | 1.74911 | 0.068 |
52DAP/reference | 2.13531 | 0.008 |
57DAP/reference | 3.07263 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11916 | 0.355 |
17DAP/reference | 1.06316 | 0.531 |
27DAP/reference | 0.9549 | 0.393 |
39DAP/reference | 1.08408 | 0.602 |
41DAP/reference | 1.0245 | 0.981 |
42DAP/reference | 0.82926 | 0.067 |
43DAP/reference | 0.91003 | 0.336 |
47DAP/reference | 0.98183 | 0.434 |
52DAP/reference | 1.09426 | 0.343 |
57DAP/reference | 1.13231 | 0.119 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97545 | 0.489 |
17DAP/reference | 0.91015 | 0.313 |
27DAP/reference | 1.36318 | 0.021 |
39DAP/reference | 1.24427 | 0.078 |
41DAP/reference | 1.0925 | 0.369 |
42DAP/reference | 1.03164 | 0.836 |
43DAP/reference | 1.18327 | 0.157 |
47DAP/reference | 1.26269 | 0.027 |
52DAP/reference | 2.10019 | 0.034 |
57DAP/reference | 1.38565 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93588 | 1 |
26DAP/20DAP | 2.15871 | 0.098 |
34DAP/26DAP | 0.92559 | 0.795 |
51DAP/34DAP | 1.34531 | 0.087 |
52DAP/51DAP | 0.75246 | 0.151 |
53DAP/52DAP | 1.12257 | 0.608 |
55DAP/53DAP | 0.67787 | 0.023 |
57DAP/55DAP | 1.59282 | 0.086 |
62DAP/57DAP | 0.74985 | 0.088 |
68DAP/62DAP | 2.05289 | 0.912 |
68DAP/14DAP | 2.42006 | 0.039 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.56419 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67578 | 0.189 |
Mature Green Tomato/Ripe Tomato | 0.86613 | 0.287 |
Immature Eggplant/Mature Eggplant | 0.73224 | 0.1 |
Ripe Pepper/Ripe Tomato | 0.98756 | 1 |
Mature Eggplant/Ripe Tomato | 1.4279 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.82629 | 0.907 |
1-1-2/M82 | 1.3298 | 0.977 |
12-2/M82 | 1.22538 | 1 |
12-4/M82 | 1.23816 | 1 |
1-3/M82 | 2.14887 | 0.248 |
2-1-1/M82 | 1.06028 | 1 |
2-1/M82 | 0.96959 | 0.322 |
2-6/M82 | 0.80727 | 1 |
3-2/M82 | 1.2433 | 0.549 |
4-1-1/M82 | 0.95866 | 1 |
4-1/M82 | 1.86908 | 1 |
4-3-2/M82 | 1.04182 | 1 |
4-3/M82 | 1.01102 | 1 |
5-3/M82 | 1.01058 | 1 |
6-2/M82 | 0.91343 | 1 |
6-3/M82 | 1.0503 | 1 |
7-1/M82 | 1.11609 | 1 |
7-2/M82 | 1.2189 | 1 |
9-3-2/M82 | 1.0537 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.41823 | 0.277 |
IL2-6/WTpooled | 0.96677 | 1 |
IL7-5/WTpooled | 1.17577 | |
IL7-3/WTpooled | 1.16775 | 1 |
IL12-4/WTpooled | 1.07581 | 0.891 |
IL1-4/WTpooled | 1.06605 | 0.426 |
WT/WTpooled | 0.94053 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9967 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04662 | 0.921 |
DC3000/delta hrp 6h | 1.06861 | 1 |
DC3000/delta hrp 12h | 1.03391 | 1 |
DC3000/delta hrp 24h | 1.03605 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04914 | 0.441 |
DC3000 delta B/DC3000 delta AB | 1.31454 | 0.121 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90408 | 0.265 |
Exp 36h | 0.74422 | 0.539 |
Exp 60h | 0.7852 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94924 | 1 |
Var 0h | 1.0798 | 0.936 |
Var 12h I row2-row1 | 1.13193 | 0.544 |
Var 12h NI row2-row1 | 1.28854 | 0.34 |
Var 36h I row2-row1 | 1.35345 | 0.489 |
Var 36h NI row2-row1 | 0.94483 | 0.706 |
Var 60h I row2-row1 | 0.75907 | 0.292 |
Var 60h NI row2-row1 | 0.99201 | 1 |
Time course 0hI-0hNI | 0.96234 | 0.791 |
Time course 12hI-12hNI | 1.08824 | 0.347 |
Time course 36hI-36hNI | 1.4323 | 0.004 |
Time course 60hI-60hNI | 1.31608 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98409 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 0.83977 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.98102 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99572 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97727 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.51606 | 0.086 |
Manapal/WT (break) | 1.20781 | 0.381 |
Manapal/WT (red) | 1.06598 | 1 |
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