Expression of 1-1-3.3.6.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.744950.183
27DAP/17DAP1.06750.883
39DAP/27DAP1.479770.296
41DAP/39DAP0.559630.045
42DAP/41DAP1.22140.926
43DAP/42DAP1.146520.94
47DAP/43DAP1.196430.633
52DAP/47DAP1.102410.869
57DAP/52DAP1.810590.794

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.049950.522
17DAP/reference1.123020.055
27DAP/reference1.089870.098
39DAP/reference1.113390.359
41DAP/reference1.02280.759
42DAP/reference0.937370.163
43DAP/reference1.017260.838
47DAP/reference1.069850.524
52DAP/reference1.036250.766
57DAP/reference0.867630.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.281920.247
27DAP/17DAP1.296270.383
39DAP/27DAP1.198280.623
41DAP/39DAP0.991290.959
42DAP/41DAP1.066171
43DAP/42DAP0.713890.036
47DAP/43DAP1.069730.853
52DAP/47DAP1.249160.463
57DAP/52DAP1.241160.282
57DAP/7DAP1.354631

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.416760.035
17DAP/reference1.555790.016
27DAP/reference1.533080.023
39DAP/reference1.622530.006
41DAP/reference1.529870.01
42DAP/reference1.442510.012
43DAP/reference1.397130.016
47DAP/reference1.749110.068
52DAP/reference2.135310.008
57DAP/reference3.072630.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119160.355
17DAP/reference1.063160.531
27DAP/reference0.95490.393
39DAP/reference1.084080.602
41DAP/reference1.02450.981
42DAP/reference0.829260.067
43DAP/reference0.910030.336
47DAP/reference0.981830.434
52DAP/reference1.094260.343
57DAP/reference1.132310.119

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975450.489
17DAP/reference0.910150.313
27DAP/reference1.363180.021
39DAP/reference1.244270.078
41DAP/reference1.09250.369
42DAP/reference1.031640.836
43DAP/reference1.183270.157
47DAP/reference1.262690.027
52DAP/reference2.100190.034
57DAP/reference1.385650.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.935881
26DAP/20DAP2.158710.098
34DAP/26DAP0.925590.795
51DAP/34DAP1.345310.087
52DAP/51DAP0.752460.151
53DAP/52DAP1.122570.608
55DAP/53DAP0.677870.023
57DAP/55DAP1.592820.086
62DAP/57DAP0.749850.088
68DAP/62DAP2.052890.912
68DAP/14DAP2.420060.039

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.564190.026

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.675780.189
Mature Green Tomato/Ripe Tomato0.866130.287
Immature Eggplant/Mature Eggplant0.732240.1
Ripe Pepper/Ripe Tomato0.987561
Mature Eggplant/Ripe Tomato1.42791

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.826290.907
1-1-2/M821.32980.977
12-2/M821.225381
12-4/M821.238161
1-3/M822.148870.248
2-1-1/M821.060281
2-1/M820.969590.322
2-6/M820.807271
3-2/M821.24330.549
4-1-1/M820.958661
4-1/M821.869081
4-3-2/M821.041821
4-3/M821.011021
5-3/M821.010581
6-2/M820.913431
6-3/M821.05031
7-1/M821.116091
7-2/M821.21891
9-3-2/M821.05371

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.418230.277
IL2-6/WTpooled0.966771
IL7-5/WTpooled1.17577
IL7-3/WTpooled1.167751
IL12-4/WTpooled1.075810.891
IL1-4/WTpooled1.066050.426
WT/WTpooled0.940531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.99671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046620.921
DC3000/delta hrp 6h1.068611
DC3000/delta hrp 12h1.033911
DC3000/delta hrp 24h1.036050.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.049140.441
DC3000 delta B/DC3000 delta AB1.314540.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.904080.265
Exp 36h0.744220.539
Exp 60h0.78520.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.949241
Var 0h1.07980.936
Var 12h I row2-row11.131930.544
Var 12h NI row2-row11.288540.34
Var 36h I row2-row11.353450.489
Var 36h NI row2-row10.944830.706
Var 60h I row2-row10.759070.292
Var 60h NI row2-row10.992011
Time course 0hI-0hNI0.962340.791
Time course 12hI-12hNI1.088240.347
Time course 36hI-36hNI1.43230.004
Time course 60hI-60hNI1.316080.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984090.529
transgenic ySAMdc/azygous control (breaker)0.839770.142
transgenic ySAMdc/azygous control (red)0.981021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995720.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.977270.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.516060.086
Manapal/WT (break)1.207810.381
Manapal/WT (red)1.065981