Expression of 1-1-3.3.7.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.116870.812
27DAP/17DAP1.066440.868
39DAP/27DAP0.988190.798
41DAP/39DAP1.070010.88
42DAP/41DAP1.019170.994
43DAP/42DAP0.981860.925
47DAP/43DAP0.965770.864
52DAP/47DAP1.185710.652
57DAP/52DAP0.978720.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.000030.787
17DAP/reference0.886210.024
27DAP/reference0.931060.048
39DAP/reference0.915460.247
41DAP/reference0.981080.542
42DAP/reference1.08710.166
43DAP/reference1.008740.982
47DAP/reference1.027330.495
52DAP/reference1.142230.01
57DAP/reference1.15860.073

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94310.277
27DAP/17DAP0.961810.748
39DAP/27DAP0.994691
41DAP/39DAP1.0120.896
42DAP/41DAP1.135590.708
43DAP/42DAP1.110560.049
47DAP/43DAP1.022890.934
52DAP/47DAP0.992710.962
57DAP/52DAP0.923210.169
57DAP/7DAP0.956841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934760.146
17DAP/reference0.957180.072
27DAP/reference0.890710.01
39DAP/reference0.933090.017
41DAP/reference0.967850.146
42DAP/reference0.94440.014
43DAP/reference0.972230.403
47DAP/reference0.98070.671
52DAP/reference0.939170.137
57DAP/reference1.01380.775

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002770.97
17DAP/reference1.062260.385
27DAP/reference1.155230.235
39DAP/reference1.186840.103
41DAP/reference1.175080.562
42DAP/reference1.034160.73
43DAP/reference1.082150.735
47DAP/reference0.992680.643
52DAP/reference1.001461
57DAP/reference1.04340.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963250.391
17DAP/reference1.072010.72
27DAP/reference0.949060.051
39DAP/reference0.973780.36
41DAP/reference0.999611
42DAP/reference1.0440.836
43DAP/reference1.067010.599
47DAP/reference1.08110.265
52DAP/reference1.025530.917
57DAP/reference1.498970.037

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.991691
26DAP/20DAP0.937020.512
34DAP/26DAP0.923910.462
51DAP/34DAP1.128880.1
52DAP/51DAP1.058310.722
53DAP/52DAP1.084820.37
55DAP/53DAP1.046240.861
57DAP/55DAP1.029950.935
62DAP/57DAP1.00211
68DAP/62DAP1.027741
68DAP/14DAP1.08010.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.829810.076

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.77238
Mature Green Tomato/Ripe Tomato0.997351
Immature Eggplant/Mature Eggplant1.302710.288
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato2.60662

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.974270.961
1-1-2/M820.929341
12-2/M820.961970.955
12-4/M821.028331
1-3/M821.037981
2-1-1/M820.841060.565
2-1/M820.959631
2-6/M820.933011
3-2/M820.983151
4-1-1/M821.110261
4-1/M820.906021
4-3-2/M820.803350.487
4-3/M820.906611
5-3/M820.980171
6-2/M820.99861
6-3/M821.021651
7-1/M820.984321
7-2/M820.861330.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.655780.243
IL2-6/WTpooled1.308670.427
IL7-5/WTpooled1.208371
IL7-3/WTpooled0.667630.418
IL12-4/WTpooled0.83550.71
IL1-4/WTpooled0.694560.422
WT/WTpooled0.906691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.267260.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032010.914
DC3000/delta hrp 6h1.028530.95
DC3000/delta hrp 12h1.043171
DC3000/delta hrp 24h1.015210.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.934970.365
DC3000 delta B/DC3000 delta AB1.016120.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.906541
Exp 36h0.604890.419
Exp 60h0.743640.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995151
Var 0h1.447660.325
Var 12h I row2-row11.135890.22
Var 12h NI row2-row11.10491
Var 36h I row2-row11.39371
Var 36h NI row2-row11.041621
Var 60h I row2-row11.066910.562
Var 60h NI row2-row11.138280.904
Time course 0hI-0hNI1.083840.852
Time course 12hI-12hNI0.954530.606
Time course 36hI-36hNI0.983610.611
Time course 60hI-60hNI1.448620.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.881610.485
transgenic ySAMdc/azygous control (breaker)1.359361
transgenic ySAMdc/azygous control (red)1.384180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999430.94

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.523060.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.208171
Manapal/WT (break)0.953731
Manapal/WT (red)1.144911