Expression of 1-1-3.3.7.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11687 | 0.812 |
27DAP/17DAP | 1.06644 | 0.868 |
39DAP/27DAP | 0.98819 | 0.798 |
41DAP/39DAP | 1.07001 | 0.88 |
42DAP/41DAP | 1.01917 | 0.994 |
43DAP/42DAP | 0.98186 | 0.925 |
47DAP/43DAP | 0.96577 | 0.864 |
52DAP/47DAP | 1.18571 | 0.652 |
57DAP/52DAP | 0.97872 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00003 | 0.787 |
17DAP/reference | 0.88621 | 0.024 |
27DAP/reference | 0.93106 | 0.048 |
39DAP/reference | 0.91546 | 0.247 |
41DAP/reference | 0.98108 | 0.542 |
42DAP/reference | 1.0871 | 0.166 |
43DAP/reference | 1.00874 | 0.982 |
47DAP/reference | 1.02733 | 0.495 |
52DAP/reference | 1.14223 | 0.01 |
57DAP/reference | 1.1586 | 0.073 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9431 | 0.277 |
27DAP/17DAP | 0.96181 | 0.748 |
39DAP/27DAP | 0.99469 | 1 |
41DAP/39DAP | 1.012 | 0.896 |
42DAP/41DAP | 1.13559 | 0.708 |
43DAP/42DAP | 1.11056 | 0.049 |
47DAP/43DAP | 1.02289 | 0.934 |
52DAP/47DAP | 0.99271 | 0.962 |
57DAP/52DAP | 0.92321 | 0.169 |
57DAP/7DAP | 0.95684 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93476 | 0.146 |
17DAP/reference | 0.95718 | 0.072 |
27DAP/reference | 0.89071 | 0.01 |
39DAP/reference | 0.93309 | 0.017 |
41DAP/reference | 0.96785 | 0.146 |
42DAP/reference | 0.9444 | 0.014 |
43DAP/reference | 0.97223 | 0.403 |
47DAP/reference | 0.9807 | 0.671 |
52DAP/reference | 0.93917 | 0.137 |
57DAP/reference | 1.0138 | 0.775 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00277 | 0.97 |
17DAP/reference | 1.06226 | 0.385 |
27DAP/reference | 1.15523 | 0.235 |
39DAP/reference | 1.18684 | 0.103 |
41DAP/reference | 1.17508 | 0.562 |
42DAP/reference | 1.03416 | 0.73 |
43DAP/reference | 1.08215 | 0.735 |
47DAP/reference | 0.99268 | 0.643 |
52DAP/reference | 1.00146 | 1 |
57DAP/reference | 1.0434 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96325 | 0.391 |
17DAP/reference | 1.07201 | 0.72 |
27DAP/reference | 0.94906 | 0.051 |
39DAP/reference | 0.97378 | 0.36 |
41DAP/reference | 0.99961 | 1 |
42DAP/reference | 1.044 | 0.836 |
43DAP/reference | 1.06701 | 0.599 |
47DAP/reference | 1.0811 | 0.265 |
52DAP/reference | 1.02553 | 0.917 |
57DAP/reference | 1.49897 | 0.037 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99169 | 1 |
26DAP/20DAP | 0.93702 | 0.512 |
34DAP/26DAP | 0.92391 | 0.462 |
51DAP/34DAP | 1.12888 | 0.1 |
52DAP/51DAP | 1.05831 | 0.722 |
53DAP/52DAP | 1.08482 | 0.37 |
55DAP/53DAP | 1.04624 | 0.861 |
57DAP/55DAP | 1.02995 | 0.935 |
62DAP/57DAP | 1.0021 | 1 |
68DAP/62DAP | 1.02774 | 1 |
68DAP/14DAP | 1.0801 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.82981 | 0.076 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77238 | |
Mature Green Tomato/Ripe Tomato | 0.99735 | 1 |
Immature Eggplant/Mature Eggplant | 1.30271 | 0.288 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 2.60662 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97427 | 0.961 |
1-1-2/M82 | 0.92934 | 1 |
12-2/M82 | 0.96197 | 0.955 |
12-4/M82 | 1.02833 | 1 |
1-3/M82 | 1.03798 | 1 |
2-1-1/M82 | 0.84106 | 0.565 |
2-1/M82 | 0.95963 | 1 |
2-6/M82 | 0.93301 | 1 |
3-2/M82 | 0.98315 | 1 |
4-1-1/M82 | 1.11026 | 1 |
4-1/M82 | 0.90602 | 1 |
4-3-2/M82 | 0.80335 | 0.487 |
4-3/M82 | 0.90661 | 1 |
5-3/M82 | 0.98017 | 1 |
6-2/M82 | 0.9986 | 1 |
6-3/M82 | 1.02165 | 1 |
7-1/M82 | 0.98432 | 1 |
7-2/M82 | 0.86133 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.65578 | 0.243 |
IL2-6/WTpooled | 1.30867 | 0.427 |
IL7-5/WTpooled | 1.20837 | 1 |
IL7-3/WTpooled | 0.66763 | 0.418 |
IL12-4/WTpooled | 0.8355 | 0.71 |
IL1-4/WTpooled | 0.69456 | 0.422 |
WT/WTpooled | 0.90669 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.26726 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03201 | 0.914 |
DC3000/delta hrp 6h | 1.02853 | 0.95 |
DC3000/delta hrp 12h | 1.04317 | 1 |
DC3000/delta hrp 24h | 1.01521 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.93497 | 0.365 |
DC3000 delta B/DC3000 delta AB | 1.01612 | 0.694 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90654 | 1 |
Exp 36h | 0.60489 | 0.419 |
Exp 60h | 0.74364 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99515 | 1 |
Var 0h | 1.44766 | 0.325 |
Var 12h I row2-row1 | 1.13589 | 0.22 |
Var 12h NI row2-row1 | 1.1049 | 1 |
Var 36h I row2-row1 | 1.3937 | 1 |
Var 36h NI row2-row1 | 1.04162 | 1 |
Var 60h I row2-row1 | 1.06691 | 0.562 |
Var 60h NI row2-row1 | 1.13828 | 0.904 |
Time course 0hI-0hNI | 1.08384 | 0.852 |
Time course 12hI-12hNI | 0.95453 | 0.606 |
Time course 36hI-36hNI | 0.98361 | 0.611 |
Time course 60hI-60hNI | 1.44862 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88161 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.35936 | 1 |
transgenic ySAMdc/azygous control (red) | 1.38418 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99943 | 0.94 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.52306 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.20817 | 1 |
Manapal/WT (break) | 0.95373 | 1 |
Manapal/WT (red) | 1.14491 | 1 |
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