Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.3.7.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.59312	0.63
27DAP/17DAP	0.86337	0.827
39DAP/27DAP	0.92759	0.769
41DAP/39DAP	1.1353	0.814
42DAP/41DAP	1.57534	0.894
43DAP/42DAP	1.07237	0.91
47DAP/43DAP	1.47711	0.842
52DAP/47DAP	1.01458	0.959
57DAP/52DAP	1.07318	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.12804	1
17DAP/reference	0.43702
27DAP/reference	0.77021	0.101
39DAP/reference	0.77508	0.054
41DAP/reference	1.20055	0.012
42DAP/reference	0.94202	0.531
43DAP/reference	1.0774	0.866
47DAP/reference	1.25812	0.085
52DAP/reference	1.02745	1
57DAP/reference	0.94354	0.503

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.41126	0.749
27DAP/17DAP	N/A	N/A
39DAP/27DAP	1.14689	0.541
41DAP/39DAP	1.27194
42DAP/41DAP	0.97942	0.777
43DAP/42DAP	1.17542	0.446
47DAP/43DAP	1.12305	0.963
52DAP/47DAP	0.90997	0.898
57DAP/52DAP	0.47481
57DAP/7DAP	1.05519

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96961	0.55
17DAP/reference	0.69754	0.012
27DAP/reference	0.68357	0.01
39DAP/reference	0.74869	0.011
41DAP/reference	0.74018	0.017
42DAP/reference	0.74	0.01
43DAP/reference	0.68774	0.012
47DAP/reference	0.45642	0.026
52DAP/reference	0.66525	0.018
57DAP/reference	0.84049	0.041

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.90347	0.736
17DAP/reference	0.88009	0.474
27DAP/reference	0.70697	0.044
39DAP/reference	1.60429	0.978
41DAP/reference	0.72048	0.173
42DAP/reference	0.9557
43DAP/reference	0.78265	0.049
47DAP/reference	N/A	N/A
52DAP/reference	1.02356
57DAP/reference	0.38319

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79269	0.032
17DAP/reference	0.92683	0.508
27DAP/reference	0.71621	0.026
39DAP/reference	0.65987	0.006
41DAP/reference	0.84736	0.033
42DAP/reference	0.72932	0.071
43DAP/reference	0.69702	0.019
47DAP/reference	1.82045	0.005
52DAP/reference	0.56855	0.056
57DAP/reference	1.05821	0.933

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.78095	0.585
26DAP/20DAP	0.69973
34DAP/26DAP	1.50627	0.542
51DAP/34DAP	2.20191	0.829
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.43079	0.171
55DAP/53DAP	0.73385
57DAP/55DAP	1.0579
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.63512
68DAP/14DAP	1.25098	0.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.48142	0.496

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.09273	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.84294	1
IL12-4/WTpooled	0.82511	0.71
IL1-4/WTpooled	1.11545
WT/WTpooled	1.05473	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.22733	0.936
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.37258	0.381
Manapal/WT (red)	N/A	N/A