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Expression of 1-1-3.3.8.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.926410.558
27DAP/17DAP1.07330.872
39DAP/27DAP0.865520.458
41DAP/39DAP1.164150.352
42DAP/41DAP1.02840.992
43DAP/42DAP0.910180.456
47DAP/43DAP1.094620.733
52DAP/47DAP1.123390.784
57DAP/52DAP0.935120.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.03550.685
17DAP/reference1.024950.717
27DAP/reference1.03580.498
39DAP/reference1.051210.413
41DAP/reference1.020190.667
42DAP/reference1.116470.053
43DAP/reference1.048770.596
47DAP/reference1.099730.012
52DAP/reference1.137690.114
57DAP/reference0.989010.61

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060160.687
27DAP/17DAP1.008270.976
39DAP/27DAP1.005640.854
41DAP/39DAP1.041760.65
42DAP/41DAP1.012811
43DAP/42DAP0.978220.684
47DAP/43DAP1.02070.88
52DAP/47DAP0.948840.677
57DAP/52DAP1.028320.851
57DAP/7DAP0.992981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.976610.55
17DAP/reference0.734330.253
27DAP/reference1.29369N/A
39DAP/reference0.846930.198
41DAP/reference1.16750.336
42DAP/reference0.83550.106
43DAP/reference1.230760.603
47DAP/reference1.048470.868
52DAP/reference1.200950.781
57DAP/reference1.108660.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002381
17DAP/reference1.070360.11
27DAP/reference1.202940.055
39DAP/reference1.135480.22
41DAP/reference1.046930.893
42DAP/reference0.995140.655
43DAP/reference0.993590.692
47DAP/reference0.951840.261
52DAP/reference1.062370.026
57DAP/reference1.17270.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062581
17DAP/reference0.945680.499
27DAP/reference0.49660.27
39DAP/reference1.039920.466
41DAP/reference1.140830.554
42DAP/reference1.022490.816
43DAP/reference1.549480.022
47DAP/reference1.112850.147
52DAP/reference1.323070.306
57DAP/reference1.284390.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.980251
26DAP/20DAP0.997981
34DAP/26DAP0.957330.728
51DAP/34DAP0.991410.911
52DAP/51DAP0.98831
53DAP/52DAP0.961580.848
55DAP/53DAP1.040430.826
57DAP/55DAP1.123870.448
62DAP/57DAP0.995181
68DAP/62DAP0.827750.314
68DAP/14DAP0.815120.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.924120.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.65380.159
Mature Green Tomato/Ripe Tomato0.754730.066
Immature Eggplant/Mature Eggplant0.869060.545
Ripe Pepper/Ripe Tomato0.323860.224
Mature Eggplant/Ripe Tomato0.20010.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.041741
1-1-2/M820.949331
12-2/M820.909950.862
12-4/M820.939220.619
1-3/M821.826790.26
2-1-1/M821.013911
2-1/M820.974631
2-6/M820.999711
3-2/M820.942311
4-1-1/M821.005881
4-1/M820.928911
4-3-2/M821.09977N/A
4-3/M820.96251
5-3/M821.054311
6-2/M820.506090.481
6-3/M821.007491
7-1/M820.927661
7-2/M821.27450.385
9-3-2/M820.760920.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.027671
IL7-5/WTpooled0.48061N/A
IL7-3/WTpooled0.905171
IL12-4/WTpooled0.785070.484
IL1-4/WTpooled1.273821
WT/WTpooled1.095910.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.165480.177

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.949080.868
DC3000/delta hrp 6h1.182471
DC3000/delta hrp 12h1.078881
DC3000/delta hrp 24h1.071450.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.024340.476
DC3000 delta B/DC3000 delta AB1.131110.336

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.244181
Exp 36h1.094791
Exp 60h1.345590.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97811
Var 0h1.021741
Var 12h I row2-row11.059650.379
Var 12h NI row2-row10.906610.627
Var 36h I row2-row11.024671
Var 36h NI row2-row10.908720.645
Var 60h I row2-row10.895810.582
Var 60h NI row2-row11.026611
Time course 0hI-0hNI1.064110.764
Time course 12hI-12hNI1.02690.754
Time course 36hI-36hNI1.44350.005
Time course 60hI-60hNI2.659050.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.365280.243
transgenic ySAMdc/azygous control (breaker)0.640230.15
transgenic ySAMdc/azygous control (red)1.28490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.952760.136

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.660740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.611741
Manapal/WT (break)1.113191
Manapal/WT (red)0.781610.229