Expression of 1-1-3.3.8.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986350.77
27DAP/17DAP1.17590.841
39DAP/27DAP0.76710.397
41DAP/39DAP1.645410.326
42DAP/41DAP1.413450.536
43DAP/42DAP0.897770.801
47DAP/43DAP0.968340.835
52DAP/47DAP0.999230.903
57DAP/52DAP0.921030.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.916450.344
17DAP/reference1.101820.239
27DAP/reference0.936040.304
39DAP/reference1.02610.615
41DAP/reference1.048740.759
42DAP/reference0.84510.01
43DAP/reference1.06850.325
47DAP/reference0.89150.032
52DAP/reference0.750760.036
57DAP/reference0.727020.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976710.732
27DAP/17DAP0.99110.943
39DAP/27DAP1.398060.104
41DAP/39DAP0.609930.013
42DAP/41DAP1.194780.241
43DAP/42DAP1.648550.016
47DAP/43DAP0.894990.395
52DAP/47DAP0.97020.898
57DAP/52DAP0.869020.103
57DAP/7DAP1.500730.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.034470.98
17DAP/reference0.944090.338
27DAP/reference1.085361
39DAP/reference0.842070.056
41DAP/reference0.905250.146
42DAP/reference0.968620.506
43DAP/reference0.992360.502
47DAP/reference1.078140.67
52DAP/reference1.064121
57DAP/reference1.004070.748

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.105270.279
17DAP/reference1.020671
27DAP/reference1.006470.642
39DAP/reference0.842520.079
41DAP/reference0.820850.04
42DAP/reference0.865760.098
43DAP/reference1.050931
47DAP/reference0.954950.284
52DAP/reference0.974390.38
57DAP/reference1.209380.072

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124480.109
17DAP/reference1.056450.865
27DAP/reference0.992550.727
39DAP/reference0.989980.755
41DAP/reference1.00290.754
42DAP/reference0.932530.552
43DAP/reference1.018790.738
47DAP/reference0.869590.207
52DAP/reference0.971180.637
57DAP/reference0.569660.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.984041
26DAP/20DAP1.069311
34DAP/26DAP1.104281
51DAP/34DAP1.005860.993
52DAP/51DAP0.925421
53DAP/52DAP1.194210.212
55DAP/53DAP1.232640.167
57DAP/55DAP1.627220.682
62DAP/57DAP1.127650.8
68DAP/62DAP0.925250.579
68DAP/14DAP0.890811

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.791970.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.773520.287
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato9.33834
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.81947
12-2/M82N/AN/A
12-4/M820.82536
1-3/M82N/AN/A
2-1-1/M821.33377
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.02835
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.938281

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.41114
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.16580.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.89931
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.267931
DC3000/delta hrp 24h0.52030.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.530350.065

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h2.742550.693
Exp 60h1.359451

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.028791
Var 0h1.017991
Var 12h I row2-row10.980170.948
Var 12h NI row2-row10.822440.427
Var 36h I row2-row11.155190.742
Var 36h NI row2-row11.061990.852
Var 60h I row2-row11.193610.523
Var 60h NI row2-row10.950181
Time course 0hI-0hNI1.07370.719
Time course 12hI-12hNI1.054980.663
Time course 36hI-36hNI0.948690.411
Time course 60hI-60hNI1.332540.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)69.21580.541
transgenic ySAMdc/azygous control (breaker)2.299481
transgenic ySAMdc/azygous control (red)1.201280.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965760.263

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.033371

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.676870.333
Manapal/WT (red)1.138131