Expression of 1-1-3.3.8.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98635 | 0.77 |
27DAP/17DAP | 1.1759 | 0.841 |
39DAP/27DAP | 0.7671 | 0.397 |
41DAP/39DAP | 1.64541 | 0.326 |
42DAP/41DAP | 1.41345 | 0.536 |
43DAP/42DAP | 0.89777 | 0.801 |
47DAP/43DAP | 0.96834 | 0.835 |
52DAP/47DAP | 0.99923 | 0.903 |
57DAP/52DAP | 0.92103 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91645 | 0.344 |
17DAP/reference | 1.10182 | 0.239 |
27DAP/reference | 0.93604 | 0.304 |
39DAP/reference | 1.0261 | 0.615 |
41DAP/reference | 1.04874 | 0.759 |
42DAP/reference | 0.8451 | 0.01 |
43DAP/reference | 1.0685 | 0.325 |
47DAP/reference | 0.8915 | 0.032 |
52DAP/reference | 0.75076 | 0.036 |
57DAP/reference | 0.72702 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97671 | 0.732 |
27DAP/17DAP | 0.9911 | 0.943 |
39DAP/27DAP | 1.39806 | 0.104 |
41DAP/39DAP | 0.60993 | 0.013 |
42DAP/41DAP | 1.19478 | 0.241 |
43DAP/42DAP | 1.64855 | 0.016 |
47DAP/43DAP | 0.89499 | 0.395 |
52DAP/47DAP | 0.9702 | 0.898 |
57DAP/52DAP | 0.86902 | 0.103 |
57DAP/7DAP | 1.50073 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03447 | 0.98 |
17DAP/reference | 0.94409 | 0.338 |
27DAP/reference | 1.08536 | 1 |
39DAP/reference | 0.84207 | 0.056 |
41DAP/reference | 0.90525 | 0.146 |
42DAP/reference | 0.96862 | 0.506 |
43DAP/reference | 0.99236 | 0.502 |
47DAP/reference | 1.07814 | 0.67 |
52DAP/reference | 1.06412 | 1 |
57DAP/reference | 1.00407 | 0.748 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10527 | 0.279 |
17DAP/reference | 1.02067 | 1 |
27DAP/reference | 1.00647 | 0.642 |
39DAP/reference | 0.84252 | 0.079 |
41DAP/reference | 0.82085 | 0.04 |
42DAP/reference | 0.86576 | 0.098 |
43DAP/reference | 1.05093 | 1 |
47DAP/reference | 0.95495 | 0.284 |
52DAP/reference | 0.97439 | 0.38 |
57DAP/reference | 1.20938 | 0.072 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12448 | 0.109 |
17DAP/reference | 1.05645 | 0.865 |
27DAP/reference | 0.99255 | 0.727 |
39DAP/reference | 0.98998 | 0.755 |
41DAP/reference | 1.0029 | 0.754 |
42DAP/reference | 0.93253 | 0.552 |
43DAP/reference | 1.01879 | 0.738 |
47DAP/reference | 0.86959 | 0.207 |
52DAP/reference | 0.97118 | 0.637 |
57DAP/reference | 0.56966 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98404 | 1 |
26DAP/20DAP | 1.06931 | 1 |
34DAP/26DAP | 1.10428 | 1 |
51DAP/34DAP | 1.00586 | 0.993 |
52DAP/51DAP | 0.92542 | 1 |
53DAP/52DAP | 1.19421 | 0.212 |
55DAP/53DAP | 1.23264 | 0.167 |
57DAP/55DAP | 1.62722 | 0.682 |
62DAP/57DAP | 1.12765 | 0.8 |
68DAP/62DAP | 0.92525 | 0.579 |
68DAP/14DAP | 0.89081 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.79197 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.77352 | 0.287 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 9.33834 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.81947 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.82536 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.33377 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.02835 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.93828 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.41114 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1658 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.8993 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.26793 | 1 |
DC3000/delta hrp 24h | 0.5203 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.53035 | 0.065 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 2.74255 | 0.693 |
Exp 60h | 1.35945 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02879 | 1 |
Var 0h | 1.01799 | 1 |
Var 12h I row2-row1 | 0.98017 | 0.948 |
Var 12h NI row2-row1 | 0.82244 | 0.427 |
Var 36h I row2-row1 | 1.15519 | 0.742 |
Var 36h NI row2-row1 | 1.06199 | 0.852 |
Var 60h I row2-row1 | 1.19361 | 0.523 |
Var 60h NI row2-row1 | 0.95018 | 1 |
Time course 0hI-0hNI | 1.0737 | 0.719 |
Time course 12hI-12hNI | 1.05498 | 0.663 |
Time course 36hI-36hNI | 0.94869 | 0.411 |
Time course 60hI-60hNI | 1.33254 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 69.2158 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 2.29948 | 1 |
transgenic ySAMdc/azygous control (red) | 1.20128 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96576 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03337 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.67687 | 0.333 |
Manapal/WT (red) | 1.13813 | 1 |
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