Expression of 1-1-3.3.9.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78463 | 0.159 |
27DAP/17DAP | 0.77113 | 0.381 |
39DAP/27DAP | 1.90714 | 0.072 |
41DAP/39DAP | 0.86869 | 0.54 |
42DAP/41DAP | 1.21819 | 0.82 |
43DAP/42DAP | 0.84989 | 0.454 |
47DAP/43DAP | 0.86594 | 0.568 |
52DAP/47DAP | 0.99347 | 0.924 |
57DAP/52DAP | 1.29149 | 0.758 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08871 | 0.814 |
17DAP/reference | 0.87931 | 0.158 |
27DAP/reference | 1.08578 | 0.165 |
39DAP/reference | 1.04753 | 0.828 |
41DAP/reference | 0.87073 | 0.201 |
42DAP/reference | 1.04723 | 1 |
43DAP/reference | 1.08541 | 0.838 |
47DAP/reference | 1.31327 | 0.093 |
52DAP/reference | 1.51066 | 0.026 |
57DAP/reference | 1.28575 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00953 | 1 |
27DAP/17DAP | 0.96046 | 0.878 |
39DAP/27DAP | 1.09793 | 0.56 |
41DAP/39DAP | 1.20647 | 0.19 |
42DAP/41DAP | 0.9377 | 0.552 |
43DAP/42DAP | 0.91626 | 0.367 |
47DAP/43DAP | 1.04775 | 0.848 |
52DAP/47DAP | 0.98204 | 0.925 |
57DAP/52DAP | 1.25304 | 0.293 |
57DAP/7DAP | 0.97416 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68971 | 0.025 |
17DAP/reference | 1.20472 | 0.199 |
27DAP/reference | 1.25709 | 0.041 |
39DAP/reference | 1.28507 | 0.007 |
41DAP/reference | 1.10758 | 0.43 |
42DAP/reference | 0.96754 | 0.436 |
43DAP/reference | 1.02468 | 1 |
47DAP/reference | 1.06114 | 0.732 |
52DAP/reference | 1.3579 | 0.055 |
57DAP/reference | 1.32825 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99614 | 0.669 |
17DAP/reference | 0.95893 | 0.536 |
27DAP/reference | 1.13893 | 0.143 |
39DAP/reference | 1.2941 | 0.093 |
41DAP/reference | 1.22677 | 0.269 |
42DAP/reference | 1.10671 | 0.342 |
43DAP/reference | 0.81259 | 0.166 |
47DAP/reference | 0.94139 | 0.311 |
52DAP/reference | 1.12862 | 0.181 |
57DAP/reference | 0.83296 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.86455 | 0.019 |
17DAP/reference | 1.12162 | 0.631 |
27DAP/reference | 1.07082 | 0.357 |
39DAP/reference | 1.15429 | 0.043 |
41DAP/reference | 1.04854 | 0.57 |
42DAP/reference | 1.37882 | 0.131 |
43DAP/reference | 1.43148 | 0.012 |
47DAP/reference | 1.09971 | 0.585 |
52DAP/reference | 1.60221 | 0.072 |
57DAP/reference | 1.57908 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.73902 | 1 |
26DAP/20DAP | 1.67074 | 0.098 |
34DAP/26DAP | 0.9156 | 0.682 |
51DAP/34DAP | 0.89086 | 0.466 |
52DAP/51DAP | 0.9839 | 1 |
53DAP/52DAP | 0.9584 | 0.854 |
55DAP/53DAP | 0.70818 | 0.14 |
57DAP/55DAP | 1.18229 | 0.818 |
62DAP/57DAP | 1.25299 | 0.622 |
68DAP/62DAP | 1.37601 | 0.392 |
68DAP/14DAP | 1.38124 | 0.108 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.60632 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.17257 | 0.287 |
Mature Green Tomato/Ripe Tomato | 1.05684 | 0.835 |
Immature Eggplant/Mature Eggplant | 0.93596 | 0.594 |
Ripe Pepper/Ripe Tomato | 0.89124 | 1 |
Mature Eggplant/Ripe Tomato | 1.04402 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02449 | 1 |
1-1-2/M82 | 1.2179 | 1 |
12-2/M82 | 0.87523 | 0.955 |
12-4/M82 | 1.09267 | 1 |
1-3/M82 | 2.69201 | 0.26 |
2-1-1/M82 | 0.74202 | 0.465 |
2-1/M82 | 0.68508 | 0.325 |
2-6/M82 | 0.86675 | 1 |
3-2/M82 | 1.21904 | 0.84 |
4-1-1/M82 | 1.22581 | 0.938 |
4-1/M82 | 1.76172 | 1 |
4-3-2/M82 | 1.43323 | 0.508 |
4-3/M82 | 1.44371 | 0.268 |
5-3/M82 | 1.23165 | 0.572 |
6-2/M82 | 1.15828 | 0.253 |
6-3/M82 | 1.01406 | 1 |
7-1/M82 | 0.85067 | 0.803 |
7-2/M82 | 1.32691 | 0.385 |
9-3-2/M82 | 1.14064 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98072 | |
IL2-6/WTpooled | 0.95322 | 1 |
IL7-5/WTpooled | 1.23202 | |
IL7-3/WTpooled | 1.1031 | 1 |
IL12-4/WTpooled | 0.99895 | 1 |
IL1-4/WTpooled | 1.03273 | 0.426 |
WT/WTpooled | 1.00139 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16573 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04427 | 0.921 |
DC3000/delta hrp 6h | 0.96093 | 0.95 |
DC3000/delta hrp 12h | 1.08332 | 1 |
DC3000/delta hrp 24h | 1.15503 | 0.322 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25321 | 0.055 |
DC3000 delta B/DC3000 delta AB | 1.16735 | 0.321 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78017 | 1 |
Exp 36h | 1.01054 | 1 |
Exp 60h | 1.03229 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03471 | 1 |
Var 0h | 1.00433 | 1 |
Var 12h I row2-row1 | 1.04761 | 1 |
Var 12h NI row2-row1 | 1.05762 | 1 |
Var 36h I row2-row1 | 1.25316 | 0.368 |
Var 36h NI row2-row1 | 0.96292 | 0.791 |
Var 60h I row2-row1 | 0.87251 | 0.374 |
Var 60h NI row2-row1 | 0.74778 | 0.329 |
Time course 0hI-0hNI | 0.84247 | 0.111 |
Time course 12hI-12hNI | 1.07098 | 0.536 |
Time course 36hI-36hNI | 1.28507 | 0.19 |
Time course 60hI-60hNI | 1.55047 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99771 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.3516 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.35092 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88637 | 1 |
Manapal/WT (break) | 1.27344 | 0.183 |
Manapal/WT (red) | 1.30612 | 0.413 |
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