Expression of 1-1-3.4.1.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.72190.575
27DAP/17DAP1.016230.843
39DAP/27DAP1.129920.944
41DAP/39DAP1.02820.773
42DAP/41DAP1.772350.232
43DAP/42DAP1.002320.937
47DAP/43DAP0.938770.736
52DAP/47DAP0.823740.551
57DAP/52DAP0.915830.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.135250.544
17DAP/reference1.019821
27DAP/reference1.176660.036
39DAP/reference0.814240.053
41DAP/reference0.823910.065
42DAP/reference1.134770.782
43DAP/reference0.821210.123
47DAP/reference1.376760.022
52DAP/reference1.163490.335
57DAP/reference1.210350.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.568650.192
27DAP/17DAP0.596950.418
39DAP/27DAP0.599510.35
41DAP/39DAP0.895350.923
42DAP/41DAP0.799820.434
43DAP/42DAP1.141670.699
47DAP/43DAP0.638670.068
52DAP/47DAP0.93040.886
57DAP/52DAP0.820650.528
57DAP/7DAP1.181631

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02663
17DAP/reference1.91693
27DAP/reference0.13417
39DAP/referenceN/AN/A
41DAP/reference1.008951
42DAP/reference0.60975
43DAP/referenceN/AN/A
47DAP/reference1.043040.685
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.860980.093
17DAP/reference0.991370.786
27DAP/reference1.130990.292
39DAP/reference1.643930.011
41DAP/reference1.338910.126
42DAP/reference1.23560.281
43DAP/reference0.940440.478
47DAP/reference1.078290.731
52DAP/reference1.15647
57DAP/reference1.010750.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.05571
17DAP/reference1.117130.767
27DAP/reference1.26148
39DAP/reference1.146760.196
41DAP/reference2.09065
42DAP/reference1.909810.006
43DAP/reference1.496430.007
47DAP/reference1.028970.708
52DAP/reference0.922860.385
57DAP/reference1.78530.039

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.258710.966
26DAP/20DAPN/AN/A
34DAP/26DAP1.08210.961
51DAP/34DAP1.55314
52DAP/51DAP0.99116
53DAP/52DAP0.68930.301
55DAP/53DAP1.071180.938
57DAP/55DAP1.88834
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.672820.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.13145
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.489280.277
IL2-6/WTpooled0.92591
IL7-5/WTpooled0.695591
IL7-3/WTpooled1.348461
IL12-4/WTpooled1.143710.367
IL1-4/WTpooled1.129331
WT/WTpooled1.05471

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.292870.392
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.531070.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.89120.297
Manapal/WT (red)N/AN/A