Expression of 1-1-3.4.1.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.7219 | 0.575 |
27DAP/17DAP | 1.01623 | 0.843 |
39DAP/27DAP | 1.12992 | 0.944 |
41DAP/39DAP | 1.0282 | 0.773 |
42DAP/41DAP | 1.77235 | 0.232 |
43DAP/42DAP | 1.00232 | 0.937 |
47DAP/43DAP | 0.93877 | 0.736 |
52DAP/47DAP | 0.82374 | 0.551 |
57DAP/52DAP | 0.91583 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13525 | 0.544 |
17DAP/reference | 1.01982 | 1 |
27DAP/reference | 1.17666 | 0.036 |
39DAP/reference | 0.81424 | 0.053 |
41DAP/reference | 0.82391 | 0.065 |
42DAP/reference | 1.13477 | 0.782 |
43DAP/reference | 0.82121 | 0.123 |
47DAP/reference | 1.37676 | 0.022 |
52DAP/reference | 1.16349 | 0.335 |
57DAP/reference | 1.21035 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.56865 | 0.192 |
27DAP/17DAP | 0.59695 | 0.418 |
39DAP/27DAP | 0.59951 | 0.35 |
41DAP/39DAP | 0.89535 | 0.923 |
42DAP/41DAP | 0.79982 | 0.434 |
43DAP/42DAP | 1.14167 | 0.699 |
47DAP/43DAP | 0.63867 | 0.068 |
52DAP/47DAP | 0.9304 | 0.886 |
57DAP/52DAP | 0.82065 | 0.528 |
57DAP/7DAP | 1.18163 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02663 | |
17DAP/reference | 1.91693 | |
27DAP/reference | 0.13417 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.00895 | 1 |
42DAP/reference | 0.60975 | |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.04304 | 0.685 |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86098 | 0.093 |
17DAP/reference | 0.99137 | 0.786 |
27DAP/reference | 1.13099 | 0.292 |
39DAP/reference | 1.64393 | 0.011 |
41DAP/reference | 1.33891 | 0.126 |
42DAP/reference | 1.2356 | 0.281 |
43DAP/reference | 0.94044 | 0.478 |
47DAP/reference | 1.07829 | 0.731 |
52DAP/reference | 1.15647 | |
57DAP/reference | 1.01075 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05571 | |
17DAP/reference | 1.11713 | 0.767 |
27DAP/reference | 1.26148 | |
39DAP/reference | 1.14676 | 0.196 |
41DAP/reference | 2.09065 | |
42DAP/reference | 1.90981 | 0.006 |
43DAP/reference | 1.49643 | 0.007 |
47DAP/reference | 1.02897 | 0.708 |
52DAP/reference | 0.92286 | 0.385 |
57DAP/reference | 1.7853 | 0.039 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25871 | 0.966 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.0821 | 0.961 |
51DAP/34DAP | 1.55314 | |
52DAP/51DAP | 0.99116 | |
53DAP/52DAP | 0.6893 | 0.301 |
55DAP/53DAP | 1.07118 | 0.938 |
57DAP/55DAP | 1.88834 | |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.67282 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.13145 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.48928 | 0.277 |
IL2-6/WTpooled | 0.9259 | 1 |
IL7-5/WTpooled | 0.69559 | 1 |
IL7-3/WTpooled | 1.34846 | 1 |
IL12-4/WTpooled | 1.14371 | 0.367 |
IL1-4/WTpooled | 1.12933 | 1 |
WT/WTpooled | 1.0547 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.29287 | 0.392 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.53107 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.8912 | 0.297 |
Manapal/WT (red) | N/A | N/A |
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