Expression of 1-1-3.4.1.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.025311
27DAP/17DAP1.241461
39DAP/27DAP0.927260.719
41DAP/39DAP0.893910.563
42DAP/41DAP0.896491
43DAP/42DAP0.859780.801
47DAP/43DAP1.241730.756
52DAP/47DAP1.073430.9
57DAP/52DAP1.324930.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.169740.5
17DAP/reference1.102260.369
27DAP/reference0.92633
39DAP/referenceN/AN/A
41DAP/reference1.053080.393
42DAP/reference1.587420.001
43DAP/reference0.982910.805
47DAP/reference1.423510.243
52DAP/reference0.89405
57DAP/reference0.81730.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.92815
27DAP/17DAP0.668570.614
39DAP/27DAP1.556220.575
41DAP/39DAP1.56596
42DAP/41DAP1.299840.936
43DAP/42DAP1.43879
47DAP/43DAP0.743460.796
52DAP/47DAP1.65141
57DAP/52DAP1.811880.082
57DAP/7DAP1.228411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.478380.025
17DAP/reference1.01411
27DAP/reference0.959350.43
39DAP/reference1.428470.015
41DAP/reference1.155380.147
42DAP/reference1.220570.308
43DAP/reference1.11520.707
47DAP/reference1.008771
52DAP/reference0.872450.278
57DAP/reference1.154650.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.794670.184
17DAP/reference1.189820.644
27DAP/reference1.596050.126
39DAP/reference0.5324
41DAP/reference0.14038
42DAP/reference1.510820.259
43DAP/reference1.28030.582
47DAP/referenceN/AN/A
52DAP/reference0.36092
57DAP/reference0.986310.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035241
17DAP/reference1.254030.365
27DAP/reference1.602910.373
39DAP/reference1.174130.264
41DAP/reference1.022541
42DAP/reference0.943190.552
43DAP/reference1.095890.599
47DAP/reference1.75783
52DAP/reference0.643330.055
57DAP/reference0.83924

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAP1.369840.594
34DAP/26DAP0.614940.099
51DAP/34DAPN/AN/A
52DAP/51DAP1.600890.253
53DAP/52DAP1.930640.83
55DAP/53DAP0.766990.515
57DAP/55DAPN/AN/A
62DAP/57DAP0.755540.681
68DAP/62DAPN/AN/A
68DAP/14DAP1.50116

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.796550.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.53238
Mature Eggplant/Ripe Tomato3.092440.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.43846
IL12-4/WTpooled0.435730.543
IL1-4/WTpooled2.26545
WT/WTpooled1.005551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.189090.413