Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.4.1.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9348	0.722
27DAP/17DAP	1.0206	0.964
39DAP/27DAP	0.93359	0.7
41DAP/39DAP	1.62966	0.553
42DAP/41DAP	1.22933	0.767
43DAP/42DAP	1.80955	0.869
47DAP/43DAP	0.75504	0.295
52DAP/47DAP	1.27287	0.889
57DAP/52DAP	0.99444	0.966

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.6182	0.317
17DAP/reference	1.57159	0.012
27DAP/reference	0.47086
39DAP/reference	1.45318	0.074
41DAP/reference	1.17996	0.338
42DAP/reference	1.35613	0.001
43DAP/reference	1.2786
47DAP/reference	1.52534	0.001
52DAP/reference	0.31495
57DAP/reference	0.57913	0.022

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.73975	0.496
27DAP/17DAP	1.35334	0.148
39DAP/27DAP	0.59205
41DAP/39DAP	N/A	N/A
42DAP/41DAP	1.06447	1
43DAP/42DAP	0.66762	0.022
47DAP/43DAP	1.11303	0.563
52DAP/47DAP	1.70889	0.21
57DAP/52DAP	0.55652
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99016	0.682
17DAP/reference	0.98928	0.599
27DAP/reference	1.04381	0.974
39DAP/reference	0.96968	0.474
41DAP/reference	1.01973	1
42DAP/reference	1.14669	0.405
43DAP/reference	0.98315	0.527
47DAP/reference	0.90201	0.293
52DAP/reference	1.03206	0.74
57DAP/reference	0.88341	0.097

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13241	0.884
17DAP/reference	1.43797	0.904
27DAP/reference	1.03222	1
39DAP/reference	0.75398	0.085
41DAP/reference	1.02184	1
42DAP/reference	1.42377	0.233
43DAP/reference	1.51116	0.462
47DAP/reference	1.29176	0.049
52DAP/reference	0.88557	0.469
57DAP/reference	1.05411	0.908

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.3342	0.112
17DAP/reference	1.43541	0.07
27DAP/reference	1.20192	0.298
39DAP/reference	1.09948	0.307
41DAP/reference	1.23397	0.139
42DAP/reference	1.14823	0.648
43DAP/reference	0.94395	0.484
47DAP/reference	1.16695	0.339
52DAP/reference	1.27978	0.194
57DAP/reference	0.5863	0.042

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.98093	1
26DAP/20DAP	0.73705
34DAP/26DAP	1.38779	1
51DAP/34DAP	0.75993	0.466
52DAP/51DAP	1.82562	1
53DAP/52DAP	1.13872	0.643
55DAP/53DAP	1.62737	0.982
57DAP/55DAP	0.46529
62DAP/57DAP	1.66981
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.4841	0.092

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.08338	0.277
IL2-6/WTpooled	0.79779	0.473
IL7-5/WTpooled	0.95625	1
IL7-3/WTpooled	1.01821	1
IL12-4/WTpooled	0.99456	1
IL1-4/WTpooled	1.05122	1
WT/WTpooled	0.85621	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A