Expression of 1-1-3.4.1.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.968070.713
27DAP/17DAP0.721670.471
39DAP/27DAP0.897670.641
41DAP/39DAP0.677630.294
42DAP/41DAP1.210690.954
43DAP/42DAP1.258060.993
47DAP/43DAP0.879470.546
52DAP/47DAP1.060340.946
57DAP/52DAP0.928550.932

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.176850.9
17DAP/reference1.230190.201
27DAP/reference1.302760.058
39DAP/reference1.253180.256
41DAP/reference0.90080.434
42DAP/reference1.521820.08
43DAP/reference1.092070.021
47DAP/reference1.964680.052
52DAP/reference0.87495
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.755640.687
27DAP/17DAP1.47236
39DAP/27DAP0.5491
41DAP/39DAP0.667690.013
42DAP/41DAP0.981830.819
43DAP/42DAP1.05716
47DAP/43DAP11.9955
52DAP/47DAP1.13820.785
57DAP/52DAP0.492760.067
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.929220.495
17DAP/reference0.806460.144
27DAP/reference0.729380.01
39DAP/reference0.963020.307
41DAP/reference0.947160.412
42DAP/reference0.989930.612
43DAP/reference1.026881
47DAP/reference1.174850.525
52DAP/reference0.89870.163
57DAP/reference1.257320.1

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.050130.848
17DAP/reference2.018880.007
27DAP/reference1.23340.178
39DAP/reference0.69490.01
41DAP/referenceN/AN/A
42DAP/reference0.982290.594
43DAP/reference0.973160.736
47DAP/reference0.55791
52DAP/reference0.807770.047
57DAP/reference0.721820.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.862960.158
17DAP/reference0.874980.198
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference1.019630.682
42DAP/reference0.994771
43DAP/reference0.777630.076
47DAP/reference2.251560.704
52DAP/reference1.160770.575
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.496130.611
26DAP/20DAPN/AN/A
34DAP/26DAP1.517611
51DAP/34DAP1.067740.949
52DAP/51DAP0.888531
53DAP/52DAP1.898430.166
55DAP/53DAP1.074330.886
57DAP/55DAP0.791720.56
62DAP/57DAP1.20322
68DAP/62DAP2.02786
68DAP/14DAP1.22767

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.153490.229

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.199630.277
IL2-6/WTpooled0.966621
IL7-5/WTpooled0.944391
IL7-3/WTpooled1.013951
IL12-4/WTpooled0.953711
IL1-4/WTpooled1.029231
WT/WTpooled0.94361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.11284
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.26608
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.408861
Manapal/WT (red)N/AN/A