Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.4.1.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.96807	0.713
27DAP/17DAP	0.72167	0.471
39DAP/27DAP	0.89767	0.641
41DAP/39DAP	0.67763	0.294
42DAP/41DAP	1.21069	0.954
43DAP/42DAP	1.25806	0.993
47DAP/43DAP	0.87947	0.546
52DAP/47DAP	1.06034	0.946
57DAP/52DAP	0.92855	0.932

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.17685	0.9
17DAP/reference	1.23019	0.201
27DAP/reference	1.30276	0.058
39DAP/reference	1.25318	0.256
41DAP/reference	0.9008	0.434
42DAP/reference	1.52182	0.08
43DAP/reference	1.09207	0.021
47DAP/reference	1.96468	0.052
52DAP/reference	0.87495
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.75564	0.687
27DAP/17DAP	1.47236
39DAP/27DAP	0.5491
41DAP/39DAP	0.66769	0.013
42DAP/41DAP	0.98183	0.819
43DAP/42DAP	1.05716
47DAP/43DAP	11.9955
52DAP/47DAP	1.1382	0.785
57DAP/52DAP	0.49276	0.067
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92922	0.495
17DAP/reference	0.80646	0.144
27DAP/reference	0.72938	0.01
39DAP/reference	0.96302	0.307
41DAP/reference	0.94716	0.412
42DAP/reference	0.98993	0.612
43DAP/reference	1.02688	1
47DAP/reference	1.17485	0.525
52DAP/reference	0.8987	0.163
57DAP/reference	1.25732	0.1

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05013	0.848
17DAP/reference	2.01888	0.007
27DAP/reference	1.2334	0.178
39DAP/reference	0.6949	0.01
41DAP/reference	N/A	N/A
42DAP/reference	0.98229	0.594
43DAP/reference	0.97316	0.736
47DAP/reference	0.55791
52DAP/reference	0.80777	0.047
57DAP/reference	0.72182	0.002

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.86296	0.158
17DAP/reference	0.87498	0.198
27DAP/reference	N/A	N/A
39DAP/reference	N/A	N/A
41DAP/reference	1.01963	0.682
42DAP/reference	0.99477	1
43DAP/reference	0.77763	0.076
47DAP/reference	2.25156	0.704
52DAP/reference	1.16077	0.575
57DAP/reference	N/A	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.49613	0.611
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.51761	1
51DAP/34DAP	1.06774	0.949
52DAP/51DAP	0.88853	1
53DAP/52DAP	1.89843	0.166
55DAP/53DAP	1.07433	0.886
57DAP/55DAP	0.79172	0.56
62DAP/57DAP	1.20322
68DAP/62DAP	2.02786
68DAP/14DAP	1.22767

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.15349	0.229

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.19963	0.277
IL2-6/WTpooled	0.96662	1
IL7-5/WTpooled	0.94439	1
IL7-3/WTpooled	1.01395	1
IL12-4/WTpooled	0.95371	1
IL1-4/WTpooled	1.02923	1
WT/WTpooled	0.9436	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.11284
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	0.26608
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.40886	1
Manapal/WT (red)	N/A	N/A