Expression of 1-1-3.4.1.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96807 | 0.713 |
27DAP/17DAP | 0.72167 | 0.471 |
39DAP/27DAP | 0.89767 | 0.641 |
41DAP/39DAP | 0.67763 | 0.294 |
42DAP/41DAP | 1.21069 | 0.954 |
43DAP/42DAP | 1.25806 | 0.993 |
47DAP/43DAP | 0.87947 | 0.546 |
52DAP/47DAP | 1.06034 | 0.946 |
57DAP/52DAP | 0.92855 | 0.932 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17685 | 0.9 |
17DAP/reference | 1.23019 | 0.201 |
27DAP/reference | 1.30276 | 0.058 |
39DAP/reference | 1.25318 | 0.256 |
41DAP/reference | 0.9008 | 0.434 |
42DAP/reference | 1.52182 | 0.08 |
43DAP/reference | 1.09207 | 0.021 |
47DAP/reference | 1.96468 | 0.052 |
52DAP/reference | 0.87495 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.75564 | 0.687 |
27DAP/17DAP | 1.47236 | |
39DAP/27DAP | 0.5491 | |
41DAP/39DAP | 0.66769 | 0.013 |
42DAP/41DAP | 0.98183 | 0.819 |
43DAP/42DAP | 1.05716 | |
47DAP/43DAP | 11.9955 | |
52DAP/47DAP | 1.1382 | 0.785 |
57DAP/52DAP | 0.49276 | 0.067 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92922 | 0.495 |
17DAP/reference | 0.80646 | 0.144 |
27DAP/reference | 0.72938 | 0.01 |
39DAP/reference | 0.96302 | 0.307 |
41DAP/reference | 0.94716 | 0.412 |
42DAP/reference | 0.98993 | 0.612 |
43DAP/reference | 1.02688 | 1 |
47DAP/reference | 1.17485 | 0.525 |
52DAP/reference | 0.8987 | 0.163 |
57DAP/reference | 1.25732 | 0.1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05013 | 0.848 |
17DAP/reference | 2.01888 | 0.007 |
27DAP/reference | 1.2334 | 0.178 |
39DAP/reference | 0.6949 | 0.01 |
41DAP/reference | N/A | N/A |
42DAP/reference | 0.98229 | 0.594 |
43DAP/reference | 0.97316 | 0.736 |
47DAP/reference | 0.55791 | |
52DAP/reference | 0.80777 | 0.047 |
57DAP/reference | 0.72182 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86296 | 0.158 |
17DAP/reference | 0.87498 | 0.198 |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.01963 | 0.682 |
42DAP/reference | 0.99477 | 1 |
43DAP/reference | 0.77763 | 0.076 |
47DAP/reference | 2.25156 | 0.704 |
52DAP/reference | 1.16077 | 0.575 |
57DAP/reference | N/A | N/A |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.49613 | 0.611 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.51761 | 1 |
51DAP/34DAP | 1.06774 | 0.949 |
52DAP/51DAP | 0.88853 | 1 |
53DAP/52DAP | 1.89843 | 0.166 |
55DAP/53DAP | 1.07433 | 0.886 |
57DAP/55DAP | 0.79172 | 0.56 |
62DAP/57DAP | 1.20322 | |
68DAP/62DAP | 2.02786 | |
68DAP/14DAP | 1.22767 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.15349 | 0.229 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.19963 | 0.277 |
IL2-6/WTpooled | 0.96662 | 1 |
IL7-5/WTpooled | 0.94439 | 1 |
IL7-3/WTpooled | 1.01395 | 1 |
IL12-4/WTpooled | 0.95371 | 1 |
IL1-4/WTpooled | 1.02923 | 1 |
WT/WTpooled | 0.9436 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.11284 | |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.26608 | |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.40886 | 1 |
Manapal/WT (red) | N/A | N/A |
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