Expression of 1-1-3.4.1.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.654310.125
27DAP/17DAP1.157650.883
39DAP/27DAP2.127660.752
41DAP/39DAP1.246890.844
42DAP/41DAP1.212870.978
43DAP/42DAP2.348040.397
47DAP/43DAP1.36710.68
52DAP/47DAP1.460360.994
57DAP/52DAP1.279440.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.411350.303
17DAP/reference1.716170.014
27DAP/reference1.654980.007
39DAP/reference1.778350.016
41DAP/reference1.723710.158
42DAP/reference1.274790.089
43DAP/reference1.59174
47DAP/reference1.110120.404
52DAP/reference1.149580.286
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.05354
27DAP/17DAP1.314130.576
39DAP/27DAP1.500851
41DAP/39DAPN/AN/A
42DAP/41DAP0.888250.416
43DAP/42DAP1.156510.83
47DAP/43DAP2.14643
52DAP/47DAP1.749390.444
57DAP/52DAPN/AN/A
57DAP/7DAP1.069541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.881310.108
17DAP/reference0.802760.049
27DAP/reference0.828420.088
39DAP/reference1.012611
41DAP/reference0.786370.098
42DAP/reference0.914010.262
43DAP/reference0.878140.082
47DAP/reference1.217410.915
52DAP/reference0.953680.363
57DAP/reference0.997220.589

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.86259
17DAP/reference1.38957
27DAP/reference1.150270.48
39DAP/reference1.17015
41DAP/reference0.738430.205
42DAP/reference1.266260.202
43DAP/reference1.579940.02
47DAP/reference1.336050.052
52DAP/referenceN/AN/A
57DAP/reference0.93048

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.940660.489
17DAP/reference0.998490.739
27DAP/reference0.771730.067
39DAP/reference0.794540.05
41DAP/reference1.008811
42DAP/reference0.990230.816
43DAP/reference0.998190.827
47DAP/reference0.971920.667
52DAP/reference0.716420.15
57DAP/reference0.966150.543

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.054311
26DAP/20DAP0.65755
34DAP/26DAP0.68387
51DAP/34DAP1.872940.042
52DAP/51DAP1.948720.032
53DAP/52DAP1.355671
55DAP/53DAP0.606110.037
57DAP/55DAP0.42733
62DAP/57DAP0.96971
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.48837

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.33887
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.985481
IL2-6/WTpooled0.77996
IL7-5/WTpooled0.89952
IL7-3/WTpooled0.789921
IL12-4/WTpooled0.5380.71
IL1-4/WTpooled1.281291
WT/WTpooled1.061191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.846870.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A