Expression of 1-1-3.4.1.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.65431 | 0.125 |
27DAP/17DAP | 1.15765 | 0.883 |
39DAP/27DAP | 2.12766 | 0.752 |
41DAP/39DAP | 1.24689 | 0.844 |
42DAP/41DAP | 1.21287 | 0.978 |
43DAP/42DAP | 2.34804 | 0.397 |
47DAP/43DAP | 1.3671 | 0.68 |
52DAP/47DAP | 1.46036 | 0.994 |
57DAP/52DAP | 1.27944 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41135 | 0.303 |
17DAP/reference | 1.71617 | 0.014 |
27DAP/reference | 1.65498 | 0.007 |
39DAP/reference | 1.77835 | 0.016 |
41DAP/reference | 1.72371 | 0.158 |
42DAP/reference | 1.27479 | 0.089 |
43DAP/reference | 1.59174 | |
47DAP/reference | 1.11012 | 0.404 |
52DAP/reference | 1.14958 | 0.286 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05354 | |
27DAP/17DAP | 1.31413 | 0.576 |
39DAP/27DAP | 1.50085 | 1 |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 0.88825 | 0.416 |
43DAP/42DAP | 1.15651 | 0.83 |
47DAP/43DAP | 2.14643 | |
52DAP/47DAP | 1.74939 | 0.444 |
57DAP/52DAP | N/A | N/A |
57DAP/7DAP | 1.06954 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88131 | 0.108 |
17DAP/reference | 0.80276 | 0.049 |
27DAP/reference | 0.82842 | 0.088 |
39DAP/reference | 1.01261 | 1 |
41DAP/reference | 0.78637 | 0.098 |
42DAP/reference | 0.91401 | 0.262 |
43DAP/reference | 0.87814 | 0.082 |
47DAP/reference | 1.21741 | 0.915 |
52DAP/reference | 0.95368 | 0.363 |
57DAP/reference | 0.99722 | 0.589 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86259 | |
17DAP/reference | 1.38957 | |
27DAP/reference | 1.15027 | 0.48 |
39DAP/reference | 1.17015 | |
41DAP/reference | 0.73843 | 0.205 |
42DAP/reference | 1.26626 | 0.202 |
43DAP/reference | 1.57994 | 0.02 |
47DAP/reference | 1.33605 | 0.052 |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.93048 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94066 | 0.489 |
17DAP/reference | 0.99849 | 0.739 |
27DAP/reference | 0.77173 | 0.067 |
39DAP/reference | 0.79454 | 0.05 |
41DAP/reference | 1.00881 | 1 |
42DAP/reference | 0.99023 | 0.816 |
43DAP/reference | 0.99819 | 0.827 |
47DAP/reference | 0.97192 | 0.667 |
52DAP/reference | 0.71642 | 0.15 |
57DAP/reference | 0.96615 | 0.543 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05431 | 1 |
26DAP/20DAP | 0.65755 | |
34DAP/26DAP | 0.68387 | |
51DAP/34DAP | 1.87294 | 0.042 |
52DAP/51DAP | 1.94872 | 0.032 |
53DAP/52DAP | 1.35567 | 1 |
55DAP/53DAP | 0.60611 | 0.037 |
57DAP/55DAP | 0.42733 | |
62DAP/57DAP | 0.96971 | |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.48837 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.33887 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98548 | 1 |
IL2-6/WTpooled | 0.77996 | |
IL7-5/WTpooled | 0.89952 | |
IL7-3/WTpooled | 0.78992 | 1 |
IL12-4/WTpooled | 0.538 | 0.71 |
IL1-4/WTpooled | 1.28129 | 1 |
WT/WTpooled | 1.06119 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.84687 | 0.055 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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